CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0423800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os04g0423800 AK108989.1 - Peroxidase precursor (EC 1.11.1.7) 3e-3 At1g44970 peroxidase, putative S.X. H.G.
0.83 95.8 Os04g0684300 AK105205.1 - Hypothetical protein 2e+1 Atcg00560 - S.X. H.G.
0.71 89.6 Os10g0455100 CA758094 - Eggshell protein family protein 9e-2 At5g39140 unknown protein S.X. H.G.
0.61 81.2 Os03g0245500 AK064707.1 - Curculin-like (mannose-binding) lectin domaincontaining protein 1e+1 At5g53560 CB5-E (CYTOCHROME B5 ISOFORM E) S.X. H.G.
0.55 73.7 Os07g0193000 9635.m00915 - HIPL1 protein precursor 3e-1 At5g62630 HIPL2 (HIPL2 PROTEIN PRECURSOR) S.X. H.G.
0.47 62.3 Os07g0421300 AK121014.1 - Glycoside hydrolase, family 31 protein 7e-15 At3g23640 HGL1 (heteroglycan glucosidase 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.3 98.4 GSM359909 IR29 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.9 98.3 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.8 98.3 GSM359908 IR29 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.2 98.0 GSM359915 IR63731 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.8 98.0 GSM359902 FL478 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.2 97.9 GSM359904 FL478 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.1 97.9 GSM261999 IAC165, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.1 97.9 GSM359914 IR63731 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
8.8 97.8 GSM359907 FL478 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
8.4 97.7 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 3e-23 111 Os01g0543100 AK105363.1 - Peroxidase 72 precursor (EC 1.11.1.7) (AtperoxP72) (PRXR8) (ATP6a) 5e-5 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.09 3e-14 81 Os07g0639000 AK102122.1 - Peroxidase 1 2e-3 At1g44970 peroxidase, putative C.G. S.X.
0.08 6e-15 83 Os05g0135200 9633.m00374 - Haem peroxidase, plant/fungal/bacterial familyprotein 8e-3 At5g15180 peroxidase, putative C.G. S.X.
0.08 6e-15 83 Os07g0677200 AF014467.1 - Peroxidase 3e-6 At5g05340 peroxidase, putative C.G. S.X.
0.08 2e-12 75 Os01g0327100 AK070715.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 5e-2 At1g44970 peroxidase, putative C.G. S.X.
0.08 2e-12 75 Os04g0688200 AK101245.1 - Anionic peroxidase precursor 3e-5 At1g60140 ATTPS10 (trehalose phosphate synthase) C.G. S.X.
0.07 1e-13 79 Os10g0109300 AK104730.1 - Peroxidase (EC 1.11.1.7) 5e-5 At1g14540 anionic peroxidase, putative C.G. S.X.
0.06 1e-13 79 Os01g0963200 9629.m07251 - Peroxidase BP 1 precursor 1e-7 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-3 44 Arabidopsis thaliana At1g44970 841062 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM - - - C.G. S.X.
0.04 6e-2 40 Glycine max Gma.8524.1.S1_at U51194.1 peroxidase - 4e-2 At2g24800 peroxidase, putative C.G. S.X.
0.37 3e-23 109 Hordeum vulgare Contig1860_x_at Contig1860 - - 2e-3 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.03 4e+0 34 Populus trichocarpa Ptp.7068.1.S1_at DN487969 hypothetical protein - 2e-7 At4g30170 peroxidase, putative C.G. S.X.
0.42 5e-113 408 Triticum aestivum Ta.5514.1.S1_a_at BJ280404 - - 3e-2 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.04 1e-2 40 Vitis vinifera 1609321_at CA817974 hypothetical protein LOC100241916 - 7e-7 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
0.58 0 837 Zea mays Zm.2505.1.S1_at BG841722 hypothetical protein LOC100216859 - 4e-5 At1g44970 peroxidase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
L GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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