CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0422700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os04g0422700 AK111485.1 - Conserved hypothetical protein 5e-1 At2g11005 glycine-rich protein S.X. H.G.
0.83 95.8 Os12g0448100 9640.m02506 - - 1e+0 At4g16240 unknown protein S.X. H.G.
0.83 95.8 Os05g0225100 AK109834.1 - Conserved hypothetical protein 2e-1 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) S.X. H.G.
0.73 91.1 Os08g0515100 NM_188989.1 - Sulfotransferase family protein 2e-3 At3g45080 sulfotransferase family protein S.X. H.G.
0.67 87.2 Os11g0295700 9639.m01769 - - 5e+0 At4g39570 kelch repeat-containing F-box family protein S.X. H.G.
0.67 87.2 Os05g0116600 AK109828.1 - Cyclin-like F-box domain containing protein 3e+0 At2g27720 60S acidic ribosomal protein P2 (RPP2A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
223.1 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
52.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.3 98.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 7e-23 109 Os12g0164200 9640.m01442 - - 7e+0 At4g25980 cationic peroxidase, putative C.G. S.X.
0.10 1e-18 95 Os03g0452600 9631.m03346 - - 9e+0 At5g45940 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) C.G. S.X.
0.03 1e-3 46 Os12g0466800 AK070991.1 - Hypothetical protein 1e-1 At1g25300 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein C.G. S.X.
0.02 3e-4 48 Os03g0626000 9631.m04119 - - 5e-2 At2g42130 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Arabidopsis thaliana At2g11005 815567 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA - - - C.G. S.X.
0.02 7e-1 36 Glycine max PsAffx.C151000013_s_at PsAffx.C151000013 - - 5e-3 At2g33730 DEAD box RNA helicase, putative C.G. S.X.
0.03 1e-3 44 Hordeum vulgare Contig11792_at Contig11792 - - 4e+0 At4g32260 ATP synthase family C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.223030.1.S1_at pmrna40817 hypothetical protein - 1e+0 At3g06780 glycine-rich protein C.G. S.X.
0.06 9e-3 42 Triticum aestivum Ta.26646.1.A1_s_at CD491469 - - 2e-1 At2g36100 integral membrane family protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1616819_at CD801479 - - 1e-2 At3g15610 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 6e-2 38 Zea mays ZmAffx.967.1.S1_s_at AI668376 Hypothetical protein LOC100193584 - 1e+1 At5g29613 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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