CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0419600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os04g0419600 CR282432 - Histone H3 5e-21 At1g09200 histone H3 S.X. H.G.
0.55 73.7 Os11g0661900 AK064062.1 - Hypothetical protein 8e-1 At5g57640 - S.X. H.G.
0.50 68.0 Os12g0628400 AK061110.1 - Fatty acid hydroxylase domain containing protein 1e-8 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) S.X. H.G.
0.48 63.7 Os02g0303200 AK107731.1 - Hypothetical protein 1e+0 At3g26060 ATPRX Q S.X. H.G.
0.38 46.9 Os02g0302900 AK110752.1 - Reticulon family protein 1e-2 At5g11060 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) S.X. H.G.
0.36 44.0 Os05g0462700 AK105816.1 - Histone H4 variant TH011 6e-24 At5g59690 histone H4 S.X. H.G.
0.36 44.0 Os01g0866200 CA754851 - Histone H3 3e-47 At1g09200 histone H3 S.X. H.G.
0.33 38.8 Os08g0106100 AK071868.1 - Hypothetical protein 4e-1 At3g45870 integral membrane family protein / nodulin MtN21-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.1 99.6 GSM99862 TCHW P5_m103 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
26.5 99.5 GSM99859 TCHW P2_m103 control, biological rep2 GSE4438 Expression data from rice under salinity stress
25.2 99.5 GSM99863 TCHW P6_m103 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
22.2 99.3 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
21.1 99.2 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
20.7 99.2 GSM99861 TCHW P4_m103 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
20.2 99.1 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
14.2 98.5 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
14.0 98.5 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
13.9 98.5 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 5e-140 498 Os11g0155900 U77296.1 - Histone H3 2e-57 At1g09200 histone H3 C.G. S.X.
0.58 2e-148 525 Os01g0866200 CA754851 - Histone H3 3e-47 At1g09200 histone H3 C.G. S.X.
0.55 4e-162 571 Os05g0438700 AK120955.1 - Histone H3 1e-47 At1g09200 histone H3 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 5e-21 101 Arabidopsis thaliana At1g09200 837440 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO - - - C.G. S.X.
0.25 3e-32 139 Glycine max Gma.3064.1.S1_at CD403129 - - 2e-21 At5g10400 histone H3 C.G. S.X.
0.31 2e-61 234 Hordeum vulgare Contig105_at Contig105 - - 7e-36 At1g09200 histone H3 C.G. S.X.
0.13 4e-10 65 Populus trichocarpa Ptp.6357.1.S1_s_at CV280463 histone H3 - 5e-87 At4g40040 histone H3.2 C.G. S.X.
0.38 5e-55 214 Triticum aestivum Ta.25157.1.S1_at CA625397 - - 1e-20 At1g09200 histone H3 C.G. S.X.
0.20 4e-22 103 Vitis vinifera 1614219_at CF413920 similar to predicted protein - 3e-47 At5g10400 histone H3 C.G. S.X.
0.29 3e-60 230 Zea mays Zm.16281.1.S1_at BM378604 - - 2e-18 At5g10980 histone H3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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