Gene omics information

Query gene ID Os04g0411400
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6079.7Os04g0411400AK110622.1-Phosphatidylethanolamine-binding protein familyprotein2e-1At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)S.X.H.G.
0.3338.8Os11g0152500AF159882.1-Phosphatidylethanolamine-binding protein familyprotein1e-16At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)S.X.H.G.
0.1611.3Os01g0950000AK064627.1-Glutathione S-transferase, C-terminal domaincontaining protein3e-2At1g52220-S.X.H.G.
0.116.5Os03g0338000AK121399.1-Alanine:glyoxylate aminotransferase-like protein(Fragment)5e-9At3g08860alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putativeS.X.H.G.
0.021.0Os05g0581900AK109090.1-Conserved hypothetical protein6e-4At4g26830catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsS.X.H.G.
0.021.0Os04g0588700AK099941.1-ABC transporter, transmembrane region domaincontaining protein9e-6At3g59140ATMRP14S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
126.9100.0GSM302921root_rep2GSE11966Expression data from rice embryo,endosperm,root,leaf and seedling
57.999.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in Musa
15.098.6GSM262000IAC165, 2 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
11.398.2GSM261999IAC165, 2 days after mock-infection, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.397.7GSM262001IAC165, 2 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.297.7GSM262019Nipponbare, 11 days after mock-infection, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.397.5GSM149412Rice Bala 1ppm Arsenate Rep3GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
6.597.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.597.2GSM262013Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.497.2GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.151e-1379Os12g0152000AF159883.1-Terminal flower 1-like protein2e-6At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.113e-1791Os11g0152500AF159882.1-Phosphatidylethanolamine-binding protein familyprotein1e-16At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.076e-963Os01g0218500AK072979.1-SP3D2e-4At4g20370TSF (TWIN SISTER OF FT)C.G.S.X.
0.064e-757Os02g02323009630.m01278-TWIN SISTER of FT protein (TFL1 like protein)2e-2At4g20370TSF (TWIN SISTER OF FT)C.G.S.X.
0.043e-1171Os12g0151900AK111756.1--7e-1At1g70990proline-rich family proteinC.G.S.X.
0.033e-1171Os06g0498800AK107056.1-MOTHER of FT and TF1 protein4e-1At1g18100E12A11C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.102e-138Arabidopsis thalianaAt2g27550817302ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.---C.G.S.X.
0.042e-242Glycine maxGmaAffx.11049.1.S1_atBU545140brother of FT and TFL1 protein-5e-3At5g03840TFL1 (TERMINAL FLOWER 1)C.G.S.X.
0.158e-24111Hordeum vulgareContig15332_atContig15332--6e-12At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.112e-1481Populus trichocarpaPtpAffx.35119.1.S1_atAB181239.1hypothetical protein-2e-20At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.358e-78291Triticum aestivumTa.7741.1.S1_atCD492091Fdr1 protein-9e-6At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.052e-859Vitis vinifera1619117_s_atBQ106731TFL1A protein-2e-14At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.031e-344Zea maysZm.15564.1.A1_atCD446261ZCN11 protein-5e-1At1g18100E12A11C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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