CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0410400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.69 87.9 Os04g0410400 AK108077.1 - Root cap family protein 1e+1 At5g13200 GRAM domain-containing protein / ABA-responsive protein-related S.X. H.G.
0.67 87.2 Os03g0320100 CF280794 - Alpha-L-arabinofuranosidase, C-terminal domaincontaining protein 1e-15 At3g10740 ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1) S.X. H.G.
0.65 83.8 Os11g0138900 AK059449.1 - Esterase/lipase/thioesterase domain containingprotein 2e-1 At2g05510 glycine-rich protein S.X. H.G.
0.59 78.0 Os09g0280500 AK106988.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 7e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) S.X. H.G.
0.56 76.3 Os05g0276500 U30479.1 - Expansin Os-EXPA3 5e-1 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) S.X. H.G.
0.56 76.3 Os04g0684300 AK105205.1 - Hypothetical protein 2e+1 Atcg00560 - S.X. H.G.
0.56 76.3 Os09g0293500 9637.m00942 - BRASSINOSTEROID INSENSITIVE 1 precursor (EC2.7.1.37) (AtBRI1) (Brassinosteroid LRR receptor kinase) 9e-15 At3g13380 BRL3 (BRI1-LIKE 3) S.X. H.G.
0.55 73.7 Os08g0477500 AU033142 - S.tuberosum patatin (Fragment) 2e+0 At1g28280 VQ motif-containing protein S.X. H.G.
0.55 73.7 Os07g0630400 AK060320.1 - Ribonuclease T2 family protein 2e+0 At3g22580 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.54 71.9 Os10g0555700 U95968.1 - Major pollen allergen Lol pI family protein 3e+0 At2g44310 calcium-binding EF hand family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.3 99.5 GSM359907 FL478 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
23.0 99.3 GSM195226 Root GSE7951 Genome-wide gene expression profiling of rice stigma
19.9 99.1 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
18.5 99.0 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
16.3 98.8 GSM100444 Rice Bala 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
14.5 98.6 GSM359906 FL478 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.5 98.5 GSM359918 IR63731 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.5 98.2 GSM302920 root_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
10.8 98.1 GSM159179 Root, 7-day-old Seedling, biological rep 3 GSE6893 Expression data for reproductive development in rice
10.5 98.1 GSM359905 FL478 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 1e-13 79 Os01g0968200 NM_189425.1 - Root cap family protein 2e+0 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.19 3e-11 71 Os01g0968300 AK122054.1 - Root cap family protein 2e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.16 8e-24 113 Os05g0552600 9633.m04465 - Extensin-like region family protein 5e-1 At5g48170 SLY2 (SLEEPY2) C.G. S.X.
0.08 8e-21 103 Os11g0151200 AK106826.1 - Conserved hypothetical protein 2e-1 At5g54370 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.02 6e-3 44 Os01g0639900 AF182806.1 - Carbonic anhydrase, chloroplast precursor (EC4.2.1.1) (Carbonate dehydratase) 6e-1 At1g50390 fructokinase-related C.G. S.X.
0.02 2e-2 42 Os01g0968400 BE039193 - Root cap family protein 1e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.01 2e-2 42 Os06g0663000 9634.m04389 - - 4e+0 At3g08680 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+1 32 Arabidopsis thaliana At5g13200 831159 GRAM domain-containing protein / ABA-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.02 1e+0 36 Glycine max PsAffx.psZS010xE01f_s_at PsAffx.psZS010xE01f - - 2e+1 At5g50770 AtHSD6 (hydroxysteroid dehydrogenase 6) C.G. S.X.
0.18 3e-29 129 Hordeum vulgare HVSMEf0002B02r2_at HVSMEf0002B02r2 - - 4e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.160464.1.A1_at CV232635 - - 2e-1 At3g27503 SCRL19 (SCR-Like 19) C.G. S.X.
0.35 8e-115 414 Triticum aestivum TaAffx.59075.1.S1_at CA643823 - - 2e-1 At4g29650 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1611189_x_at CF201446.1 - - 3e+0 At2g28510 Dof-type zinc finger domain-containing protein C.G. S.X.
0.21 1e-22 107 Zea mays Zm.53.1.S1_at AB021176.1 root cap periphery gene2 - 2e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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