CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0401800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 60.9 Os04g0401800 AK103868.1 - DNA repair metallo-beta-lactamase domaincontaining protein 2e-1 At5g65180 - S.X. H.G.
0.46 60.9 Os08g0369700 9636.m02793 - HesB/YadR/YfhF family protein 7e-5 At5g03905 hesB-like domain-containing protein S.X. H.G.
0.12 7.2 Os01g0144600 AK061501.1 - Hypothetical protein 5e-1 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) S.X. H.G.
0.09 4.9 Os07g0673700 AK071934.1 - Cyclin-like F-box domain containing protein 4e+0 At3g43583 unknown protein S.X. H.G.
0.08 4.2 Os10g0412000 AK066864.1 - Phospholipid-translocating P-type ATPase, flippasefamily protein 8e-45 At1g59820 ALA3 (Aminophospholipid ATPase3) S.X. H.G.
0.08 4.2 Os07g0657500 AK058476.1 - - 3e-2 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) S.X. H.G.
0.04 2.0 Os01g0859600 AK072151.1 - Cyclin-like F-box domain containing protein 2e-5 At1g67190 F-box family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.5 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.2 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.2 96.0 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
3.9 95.8 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
3.8 95.7 GSM302919 leaf_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.3 95.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.0 94.6 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
2.9 94.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.8 94.3 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
2.7 94.1 GSM302921 root_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 8e-6 54 Os11g0176200 AK121851.1 - HUA enhancer 2 4e-35 At2g06990 HEN2 (hua enhancer 2) C.G. S.X.
0.01 2e-3 46 Os12g0605100 AY224547.1 - Hypothetical protein 3e+0 At4g25130 peptide methionine sulfoxide reductase, putative C.G. S.X.
0.01 8e-3 44 Os03g0719500 AK106321.1 - Ser-Thr protein kinase-like protein 8e-99 At1g73450 protein kinase, putative C.G. S.X.
0.01 8e-3 44 Os09g0327100 AK071461.1 - - 2e-31 At5g60860 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) C.G. S.X.
0.01 3e-2 42 Os03g0402233 9631.m02813 - - 1e-1 At1g54215 proline-rich family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 38 Arabidopsis thaliana At5g65180 836642 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV - - - C.G. S.X.
0.02 3e-1 38 Glycine max GmaAffx.8115.1.A1_at BE659574 - - 2e+0 At3g25120 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein C.G. S.X.
0.03 1e-1 38 Hordeum vulgare Contig11737_at Contig11737 - - 9e+0 At5g46930 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.04 9e-5 50 Populus trichocarpa PtpAffx.211810.1.S1_at pmrna23163 hypothetical protein - 1e-20 At3g26680 SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) C.G. S.X.
0.02 1e+0 36 Triticum aestivum TaAffx.8456.1.S1_at CA625136 - - 8e-4 At4g22460 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1616431_at CF605090 - - 7e-2 At3g57500 unknown protein C.G. S.X.
0.47 1e-176 619 Zea mays Zm.2952.1.A1_a_at CF629660 hypothetical protein LOC100192920 - 2e-3 At3g26680 SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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