CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0389800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 63.7 Os04g0389800 AK109628.1 - Acetohydroxyacid synthase 3e-1 At5g53870 plastocyanin-like domain-containing protein S.X. H.G.
0.27 27.5 Os11g0705900 AK063519.1 - GRAS transcription factor domain containingprotein 3e-1 At3g18420 tetratricopeptide repeat (TPR)-containing protein S.X. H.G.
0.21 17.9 Os01g0641800 9629.m04342 - AAA ATPase, central region domain containingprotein 5e-2 At3g55460 SCL30 S.X. H.G.
0.20 16.5 Os09g0371200 9637.m01751 - Major facilitator superfamily protein 9e-4 At5g10190 transporter-related S.X. H.G.
0.17 12.6 Os02g0136900 AK111638.1 - Protein kinase domain containing protein 2e-2 At3g53840 protein kinase family protein S.X. H.G.
0.10 5.7 Os01g0934700 AK072603.1 - Esterase/lipase/thioesterase domain containingprotein 5e-4 At2g23580 MES4 (METHYL ESTERASE 4) S.X. H.G.
0.09 4.9 Os03g0598700 AK108026.1 - Zn-finger, RING domain containing protein 2e-7 At5g38895 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.08 4.2 Os01g0118600 9629.m00203 - Protein of unknown function DUF563 family protein 6e-5 At3g18170 transferase, transferring glycosyl groups S.X. H.G.
0.05 2.5 Os02g0763800 AK108759.1 - Xyloglucan fucosyltransferase family protein 3e+0 At1g14080 FUT6 (FUCOSYLTRANSFERASE 6) S.X. H.G.
0.04 2.0 Os05g0433600 9633.m03338 - - 2e+0 At5g22650 HD2B (HISTONE DEACETYLASE 2B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.8 99.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.1 99.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.1 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.2 99.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.1 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.4 99.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 1e-162 575 Os02g0510200 AB049822.1 - Acetohydroxyacid synthase 3e-10 At3g48560 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) C.G. S.X.
0.02 2e-3 46 Os01g0843900 NM_190563.1 - Laccase (EC 1.10.3.2) 8e-2 At5g23440 FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1) C.G. S.X.
0.01 2e-3 46 Os02g0151300 9630.m00500 - Endo-1,4-beta-glucanase (EC 3.2.1.4) (Fragment) 9e-6 At2g32990 AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8) C.G. S.X.
0.01 2e-3 46 Os06g0247900 AK065325.1 - Endo-beta-1,4-glucanase precursor (EC 3.2.1.4) 1e-5 At1g64390 AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 38 Arabidopsis thaliana At5g53870 835468 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVA - - - C.G. S.X.
0.11 4e-10 67 Glycine max GmaAffx.55215.1.S1_at CB063388 - - 3e+0 At1g53708 RTFL9 (ROTUNDIFOLIA LIKE 9) C.G. S.X.
0.04 4e-5 50 Hordeum vulgare rbaal1d15_s_at rbaal1d15 - - 3e+0 At5g43700 ATAUX2-11 (AUXIN INDUCIBLE 2-11) C.G. S.X.
0.02 1e-4 50 Populus trichocarpa PtpAffx.8448.3.A1_at CV265191 - - 3e-39 At3g48560 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) C.G. S.X.
0.28 1e-98 361 Triticum aestivum Ta.14631.1.S1_s_at CK156269 - - 2e-11 At3g48560 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) C.G. S.X.
0.03 1e-3 44 Vitis vinifera 1609549_at CF210611 hypothetical protein LOC100259979 - 3e-18 At3g48560 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) C.G. S.X.
0.13 4e-20 99 Zea mays Zm.3831.1.S1_at CF627002 hypothetical protein LOC100274341 - 7e-6 At3g48560 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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