CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0387900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.96 99.7 Os04g0387900 AK063212.1 - AT.I.24-6 protein (Fragment) 3e-5 At3g01940 unknown protein S.X. H.G.
0.24 22.4 Os01g0900900 AK120577.1 - Ovarian tumour, otubain domain containing protein 2e+0 At1g75180 unknown protein S.X. H.G.
0.23 21.2 Os12g0480100 BU673915 - One helix protein (OHP) 2e-2 At5g02120 OHP (ONE HELIX PROTEIN) S.X. H.G.
0.20 16.5 Os02g0766000 AK067075.1 - DCL protein, chloroplast precursor (Defectivechloroplasts and leaves protein) 6e-7 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related S.X. H.G.
0.19 15.1 Os12g0276100 AK062912.1 - Hypothetical protein 2e+0 At3g17830 DNAJ heat shock family protein S.X. H.G.
0.18 13.7 Os02g0725200 AK103602.1 - Nuclear protein SET domain containing protein 3e-25 At3g07670 SET domain-containing protein S.X. H.G.
0.18 13.7 Os05g0568900 AK120626.1 - Protease Do-like 1, chloroplast precursor (EC3.4.21.-) 7e-60 At3g27925 DEGP1 (DegP protease 1) S.X. H.G.
0.18 13.7 Os03g0800500 AK070229.1 - - 2e-1 At1g78410 VQ motif-containing protein S.X. H.G.
0.17 12.6 Os02g0122500 BQ908554 - Conserved hypothetical protein 9e-1 At1g55546 unknown protein S.X. H.G.
0.17 12.6 Os01g0889900 AK099945.1 - S-locus glycoprotein family protein 1e-3 At1g34300 lectin protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.5 99.8 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
30.8 99.7 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
25.2 99.5 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
12.9 98.4 GSM431933 Shoot- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
11.2 98.2 GSM431934 Shoot- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.0 97.0 GSM278847 WuYun3-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.4 96.8 GSM278848 WuYun3-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.8 96.5 GSM174883 A mock 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
4.2 96.0 GSM421683 XOC, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.0 95.9 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 6e-26 119 Os02g0509500 AK105187.1 - AT.I.24-5 protein (Fragment) 1e-3 At3g27030 unknown protein C.G. S.X.
0.06 5e-11 69 Os01g0923200 AK060288.1 - Conserved hypothetical protein 1e-9 At3g01940 unknown protein C.G. S.X.
0.06 3e-6 54 Os02g0508100 BI802575 - Conserved hypothetical protein 4e-4 At3g01950 unknown protein C.G. S.X.
0.05 4e-24 113 Os01g0971400 AK105881.1 - Cysteine proteinase 1e-2 At1g20850 XCP2 (xylem cysteine peptidase 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 3e-5 50 Arabidopsis thaliana At3g01940 821177 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P - - - C.G. S.X.
0.07 3e-2 40 Glycine max Gma.17912.1.S1_at AW705113 - - 4e-7 At3g27030 unknown protein C.G. S.X.
0.13 3e-12 71 Hordeum vulgare Contig8535_s_at Contig8535 - - 5e-3 At1g76180 ERD14 (EARLY RESPONSE TO DEHYDRATION 14) C.G. S.X.
0.05 5e-1 36 Populus trichocarpa PtpAffx.65083.1.A1_at CK095236 - - 2e+1 At5g14440 - C.G. S.X.
0.20 9e-27 121 Triticum aestivum Ta.6177.1.S1_at CA717331 - - 2e-5 At3g01950 unknown protein C.G. S.X.
0.08 1e-1 36 Vitis vinifera 1618396_at CF373590 hypothetical protein LOC100261671 - 1e-7 At3g27030 unknown protein C.G. S.X.
0.15 3e-15 81 Zea mays Zm.7588.1.A1_s_at CD438308 hypothetical protein LOC100275259 /// hypothetical protein LOC100278792 - 7e-3 At5g40970 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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