CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0382900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.69 87.9 Os04g0382900 AK062807.1 - Conserved hypothetical protein 2e+0 At3g18518 RTFL20 (ROTUNDIFOLIA LIKE 20) S.X. H.G.
0.72 89.8 Os10g0150400 CF308064 - Protein of unknown function DUF1210 family protein 2e+0 At5g14340 AtMYB40 (myb domain protein 40) S.X. H.G.
0.70 88.4 Os10g0150600 AK072923.1 - Protein of unknown function DUF1210 family protein 5e-1 At2g01760 ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) S.X. H.G.
0.67 87.2 Os08g0460000 AB010876.1 - Germin-like protein 5 (Germin-like protein 1) 5e-1 At3g51060 STY1 (STYLISH 1) S.X. H.G.
0.65 83.8 Os05g0190500 AK060968.1 - Acid phosphatase (Class B) family protein 2e+0 At1g20340 DRT112 S.X. H.G.
0.60 79.7 Os10g0150800 AK061299.1 - Protein of unknown function DUF1210 family protein 2e+0 At5g14340 AtMYB40 (myb domain protein 40) S.X. H.G.
0.60 79.7 Os04g0545600 AK119259.1 - Uclacyanin 3-like protein 2e+0 At3g03090 AtVGT1 (Arabidopsis thaliana vacuolar glucose transporter 1) S.X. H.G.
0.58 77.0 Os04g0644400 AK061322.1 - Proline-rich-like protein 6e-1 At3g55880 unknown protein S.X. H.G.
0.55 73.7 Os02g0662100 AK058218.1 - ZmGR1a protein 4e-1 At4g12510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.47 62.3 Os10g0150700 AK067147.1 - Protein of unknown function DUF1210 family protein 2e+0 At5g46060 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.7 98.5 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
10.3 98.1 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
10.3 98.1 GSM254091 Rice overexpressed OsSKIPa, biological repeat 1 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
9.7 98.0 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
9.7 98.0 GSM431936 Shoot- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.3 97.9 GSM254096 Rice Control 1 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
9.1 97.9 GSM254095 Rice suppressed OsSKIPa, biological repeat 3 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
8.9 97.8 GSM431935 Shoot- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.6 97.8 GSM304654 Mutant stable line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
8.3 97.7 GSM304646 Unstable transgenic line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 1e-36 155 Os04g0383700 AK063211.1 - Conserved hypothetical protein 1e+0 At2g19310 - C.G. S.X.
0.04 8e-4 46 Os08g0158600 NM_189050.1 - Conserved hypothetical protein 3e+0 At1g31330 PSAF (photosystem I subunit F) C.G. S.X.
0.02 8e-4 46 Os08g0491300 9636.m03860 - - 8e-1 At2g45670 calcineurin B subunit-related C.G. S.X.
0.01 1e-5 52 Os05g0114600 AK120824.1 - Conserved hypothetical protein 9e-8 At5g16820 HSF3 (HEAT SHOCK FACTOR 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Arabidopsis thaliana At3g18518 5008008 RTFL20 (ROTUNDIFOLIA LIKE 20) Member of a family of small polypeptides found only in angiosperm lineages.Contains a conserved 29 amino acid domain (RTF or DVL domain). - - - C.G. S.X.
0.04 1e-1 38 Glycine max PsAffx.C1000080_at PsAffx.C1000080 - - 2e-2 At1g04445 zinc finger (C2H2 type) family protein C.G. S.X.
0.04 3e-3 42 Hordeum vulgare Contig17069_at Contig17069 - - 1e-2 At1g65000 unknown protein C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.58744.1.A1_at CK092087 - - 5e-1 At4g17010 unknown protein C.G. S.X.
0.04 2e-3 44 Triticum aestivum TaAffx.59230.1.S1_at CA605645 - - 3e-4 At1g65000 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1613978_at BQ797143 hypothetical protein LOC100253526 - 1e+0 At2g40080 ELF4 (EARLY FLOWERING 4) C.G. S.X.
0.03 4e-2 38 Zea mays Zm.16228.2.S1_x_at CF627633 hypothetical protein LOC100275186 - 2e-2 At4g17310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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