CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0380200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os04g0380200 AK104769.1 - Conserved hypothetical protein 1e-1 At3g27210 unknown protein S.X. H.G.
0.46 60.9 Os12g0199100 AK065572.1 - Disease resistance protein family protein 2e+0 At5g49590 unknown protein S.X. H.G.
0.38 46.9 Os12g0129000 9640.m00264 - Eukaryotic protein of unknown function DUF872family protein 3e-1 At5g65350 histone H3 S.X. H.G.
0.35 41.7 Os09g0447300 CB675967 - Cytochrome P450 family protein 2e+0 At3g52060 unknown protein S.X. H.G.
0.33 38.8 Os08g0129400 9636.m00269 - - 4e+0 At1g22520 unknown protein S.X. H.G.
0.19 15.1 Os01g0282400 NM_187704.1 - - 2e+1 At5g25280 serine-rich protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
243.6 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.2 94.9 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
2.8 94.3 GSM262010 Nipponbare, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.6 93.8 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
2.6 93.8 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
2.5 93.6 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
2.5 93.6 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.5 93.6 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.2 92.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.1 92.4 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-2 40 Os06g0579700 9634.m03634 - - 3e+0 At1g77770 protein binding / zinc ion binding C.G. S.X.
0.03 7e-2 40 Os11g0608800 9639.m03605 - - 3e+0 At1g73120 unknown protein C.G. S.X.
0.02 2e-2 42 Os01g0283100 AK071713.1 - Ferripyochelin-binding protein-like 1e-35 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.02 7e-2 40 Os02g0820700 AK061365.1 - Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-likeSNARE 14a) (AtBS14a) 3e-18 At3g58170 BS14A (BET1P/SFT1P-LIKE PROTEIN 14A) C.G. S.X.
0.01 2e-2 42 Os01g0307500 AK108663.1 - Cation transporter family protein 1e+0 At3g02670 proline-rich family protein C.G. S.X.
0.01 2e-2 42 Os07g0581300 AK103439.1 - Conserved hypothetical protein 2e-20 At1g45150 unknown protein C.G. S.X.
0.01 7e-2 40 Os06g0579600 AK067582.1 - Hypothetical protein 8e+0 At5g43175 basic helix-loop-helix (bHLH) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-1 38 Arabidopsis thaliana At3g27210 822340 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF - - - C.G. S.X.
0.04 5e-2 40 Glycine max Gma.4818.2.S1_at BG043694 - - 8e-1 At5g21960 AP2 domain-containing transcription factor, putative C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig5416_s_at Contig5416 - - 9e-1 At1g51140 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.04 2e-10 67 Populus trichocarpa PtpAffx.10854.1.S1_s_at CV267685 hypothetical protein - 2e+0 At5g40500 unknown protein C.G. S.X.
0.16 2e-31 137 Triticum aestivum TaAffx.23910.1.S1_s_at CK198852 - - 1e-1 At1g33055 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1617484_s_at CB003457 - - 9e-1 At5g54630 zinc finger protein-related C.G. S.X.
0.04 3e-4 46 Zea mays Zm.2097.1.A1_at CF021460 hypothetical protein LOC100274189 - 6e-4 At3g27210 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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