CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0373400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.35 41.7 Os04g0373400 9632.m02891 - Multi antimicrobial extrusion protein MatE familyprotein 2e-4 At5g52450 MATE efflux protein-related S.X. H.G.
0.20 16.5 Os01g0369900 AK100034.1 - NADH:flavin oxidoreductase/NADH oxidase familyprotein 6e-3 At1g76690 OPR2 S.X. H.G.
0.15 10.3 Os10g0114300 AK063329.1 - Aldo/keto reductase family protein 6e-1 At1g35680 50S ribosomal protein L21, chloroplast / CL21 (RPL21) S.X. H.G.
0.13 8.2 Os04g0674700 BI812716 - Amp-binding protein 1e+0 At3g18295 unknown protein S.X. H.G.
0.08 4.2 Os06g0650900 AK071882.1 - Heat shock protein DnaJ family protein 7e-1 At2g39855 unknown protein S.X. H.G.
0.07 3.7 Os01g0695800 AK108373.1 - Multidrug resistance protein 1 homolog 2e-10 At3g62150 PGP21 (P-GLYCOPROTEIN 21) S.X. H.G.
0.06 3.0 Os02g0526400 AY166599.1 - ERD1 protein, chloroplast precursor 6e-25 At5g51070 ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.0 99.9 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
52.1 99.9 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
47.9 99.9 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
43.3 99.9 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
22.8 99.3 GSM173094 Rice OsSRT1 RNAi transgenic line LM3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
15.4 98.7 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
13.9 98.5 GSM173080 Rice MH63 Control2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
10.2 98.0 GSM173086 Rice MH63 Control1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
9.4 97.9 GSM173089 Rice MH63 Control3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
8.7 97.8 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 6e-145 515 Os10g0190900 AK070457.1 - - 5e-5 At2g34360 antiporter/ drug transporter/ transporter C.G. S.X.
0.34 6e-80 299 Os06g0495500 AK109873.1 - Multi antimicrobial extrusion protein MatE familyprotein 6e-5 At2g34360 antiporter/ drug transporter/ transporter C.G. S.X.
0.32 9e-39 163 Os06g0494400 AK067594.1 - Multi antimicrobial extrusion protein MatE familyprotein 1e-3 At5g52450 MATE efflux protein-related C.G. S.X.
0.26 4e-50 200 Os10g0344900 AK073245.1 - Multi antimicrobial extrusion protein MatE familyprotein 2e-1 At5g52450 MATE efflux protein-related C.G. S.X.
0.20 1e-31 139 Os10g0344000 AK105578.1 - Multi antimicrobial extrusion protein MatE familyprotein 6e-2 At5g52450 MATE efflux protein-related C.G. S.X.
0.18 9e-39 163 Os10g0345100 AK069792.1 - Multi antimicrobial extrusion protein MatE familyprotein 1e+0 At1g15180 MATE efflux family protein C.G. S.X.
0.16 9e-33 143 Os06g0494700 9634.m02870 - Hypothetical protein 2e-4 At5g52450 MATE efflux protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-4 48 Arabidopsis thaliana At5g52450 835321 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:plasma membrane, membrane;BOPFAM - - - C.G. S.X.
0.02 4e+0 34 Glycine max PsAffx.psMC006xJ01f_s_at PsAffx.psMC006xJ01f - - 2e-1 At5g57887 unknown protein C.G. S.X.
0.50 3e-69 262 Hordeum vulgare Contig15296_s_at Contig15296 - - 9e-1 At1g66780 MATE efflux family protein C.G. S.X.
0.04 4e-3 44 Populus trichocarpa PtpAffx.210405.1.S1_at pmrna20449 hypothetical protein - 2e-10 At5g52450 MATE efflux protein-related C.G. S.X.
0.23 1e-27 125 Triticum aestivum Ta.7327.1.S1_at CK196817 - - 4e+0 At2g34360 antiporter/ drug transporter/ transporter C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1619427_at CF515281 hypothetical protein LOC100242781 - 4e-3 At4g30520 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.03 2e-2 40 Zea mays Zm.8787.1.A1_at CB350639 - - 3e-1 At3g01170 structural constituent of ribosome C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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