CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0354600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0354600 AK065894.1 - Male sterility protein family protein 4e+0 At1g35333 unknown protein S.X. H.G.
0.73 91.1 Os02g0308800 AK104533.1 - Beta-Ig-H3/fasciclin domain containing protein 2e+0 At5g43280 ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1) S.X. H.G.
0.73 91.1 Os03g0832800 AK062843.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-2 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) S.X. H.G.
0.67 87.2 Os04g0353600 CB641510 - Male sterility protein family protein 2e+0 At1g35333 unknown protein S.X. H.G.
0.57 77.0 Os01g0872600 AK060248.1 - Hypothetical protein 6e-2 At1g72125 transporter S.X. H.G.
0.44 58.1 Os06g0149100 AK099064.1 - Lipolytic enzyme, G-D-S-L family protein 3e+0 At5g22810 GDSL-motif lipase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.2 98.0 GSM421703 XOO, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.1 98.0 GSM421677 XOC, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.7 97.8 GSM431936 Shoot- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.7 97.8 GSM421684 XOC, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.4 97.7 GSM281583 Rice Zhonghua11, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
8.0 97.6 GSM421673 XOC, 4 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.7 97.6 GSM421720 MOCK, 24 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.7 97.6 GSM421718 MOCK, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.6 97.5 GSM431935 Shoot- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.5 97.5 GSM421700 XOO, 24 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1572 Os04g0353600 CB641510 - Male sterility protein family protein 2e+0 At1g35333 unknown protein C.G. S.X.
0.46 6e-94 345 Os04g0355500 9632.m02710 - - 7e-1 At1g35333 unknown protein C.G. S.X.
0.07 5e-4 48 Os07g0489100 9635.m02993 - - 3e-9 At3g44540 FAR4 (FATTY ACID REDUCTASE 4) C.G. S.X.
0.06 2e+0 36 Os08g0298700 9636.m01991 - Male sterility protein family protein 2e-4 At5g22500 FAR1 (FATTY ACID REDUCTASE 1) C.G. S.X.
0.03 1e-1 40 Os09g0567500 AK071956.1 - Fatty acyl coA reductase 7e-5 At4g33790 CER4 (ECERIFERUM 4) C.G. S.X.
0.02 8e-1 36 Os07g0414200 AK067835.1 - SAM (and some other nucleotide) binding motifdomain containing protein 8e-4 At1g54650 methyltransferase C.G. S.X.
0.01 1e-1 40 Os09g0567600 AK106807.1 - Hypothetical protein 6e-5 At4g33790 CER4 (ECERIFERUM 4) C.G. S.X.
0.01 8e-1 36 Os06g0717700 AK111417.1 - Hypothetical protein 1e+0 At5g38800 AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43) C.G. S.X.
0.01 8e-1 36 Os08g0165000 9636.m00617 - - 5e-2 At1g78450 SOUL heme-binding family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Arabidopsis thaliana At1g35333 6241024 unknown protein F:unknown;P:unknown;C:endomembrane system - - - C.G. S.X.
0.02 5e+0 34 Glycine max GmaAffx.87793.2.S1_at BQ740671 - - 2e-1 At5g63500 unknown protein C.G. S.X.
0.02 1e-4 48 Hordeum vulgare Contig16214_at Contig16214 - - 2e+0 At3g26790 FUS3 (FUSCA 3) C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.82948.1.A1_at CV226169 - - 4e+0 At5g11550 binding C.G. S.X.
0.09 3e-10 67 Triticum aestivum TaAffx.114226.1.S1_at BJ234930 - - 1e+0 At3g21400 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1620681_at CB001091 hypothetical protein LOC100244005 - 1e-9 At5g11330 monooxygenase family protein C.G. S.X.
0.03 4e-7 56 Zea mays Zm.5496.1.S1_at AY105645.1 hypothetical protein LOC100275844 - 4e+0 At2g25650 DNA-binding storekeeper protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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