CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0350433

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 91.9 Os04g0350433 9632.m02668 - - 1e+1 At2g04690 cellular repressor of E1A-stimulated genes (CREG) family S.X. H.G.
0.74 91.4 Os05g0203400 9633.m00999 - Conserved hypothetical protein 3e-1 At1g02405 proline-rich family protein S.X. H.G.
0.67 87.2 Os11g0122700 9639.m00200 - - 1e+1 At4g29610 cytidine deaminase, putative / cytidine aminohydrolase, putative S.X. H.G.
0.59 78.0 Os04g0188200 9632.m00975 - - 4e-1 At5g06270 unknown protein S.X. H.G.
0.58 77.0 Os09g0413800 9631.m05442 - - 6e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein S.X. H.G.
0.56 76.3 Os03g0219000 9631.m01114 - - 6e+0 At4g14819 unknown protein S.X. H.G.
0.56 76.3 Os01g0842100 NM_190550.1 - - 3e+0 At3g05490 RALFL22 (ralf-like 22) S.X. H.G.
0.55 73.7 Os04g0211600 9632.m01218 - - 6e-1 At1g48145 unknown protein S.X. H.G.
0.52 69.6 Os02g0655000 9639.m04465 - - 2e-1 At3g04640 glycine-rich protein S.X. H.G.
0.51 68.7 Os03g0408600 9631.m02871 - - 1e+1 At5g51210 OLEO3 (OLEOSIN3) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.4 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
35.3 99.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.8 99.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.5 99.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.1 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.7 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.5 99.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.3 99.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.6 99.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-55 216 Os02g0620600 AK107204.1 - Rh-like protein/ammonium transporter familyprotein 2e-17 At4g13510 AMT1 C.G. S.X.
0.06 1e-10 67 Os04g0509500 AK107601.1 - Conserved hypothetical protein 3e-19 At1g64780 ATAMT1 C.G. S.X.
0.05 7e-9 61 Os04g0509600 AF001505.1 - - 1e-12 At1g64780 ATAMT1 C.G. S.X.
0.03 7e-3 42 Os02g0620500 9630.m03934 - High affinity ammonium transporter 3e-19 At1g64780 ATAMT1 C.G. S.X.
0.03 1e-1 38 Os02g0321800 AK067188.1 - B-cell receptor-associated 31-like family protein 1e-1 At5g56760 ATSERAT1 C.G. S.X.
0.03 4e-1 36 Os07g0291200 AK064969.1 - Conserved hypothetical protein 1e-1 At5g45620 26S proteasome regulatory subunit, putative (RPN9) C.G. S.X.
0.01 1e-1 38 Os04g0556000 AK063759.1 - Copper-translocating P-type ATPase family protein 2e-46 At1g63440 HMA5 (HEAVY METAL ATPASE 5) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+1 30 Arabidopsis thaliana At2g04690 815012 cellular repressor of E1A-stimulated genes (CREG) family F:FMN binding;P:biological_process unknown;C:vacuole;MBOPF - - - C.G. S.X.
0.04 3e-1 36 Glycine max GmaAffx.58953.1.S1_at BG156309 - - 3e-10 At5g48020 unknown protein C.G. S.X.
0.19 6e-37 153 Hordeum vulgare Contig20708_at Contig20708 - - 1e-4 At4g13510 AMT1 C.G. S.X.
0.04 2e+1 30 Populus trichocarpa PtpAffx.32987.1.A1_at CK092180 - - 9e+0 At5g67190 AP2 domain-containing transcription factor, putative C.G. S.X.
0.10 5e-33 141 Triticum aestivum Ta.12823.1.S1_at CA638403 Ammonium transporter Amt1;1 - 2e-20 At4g13510 AMT1 C.G. S.X.
0.03 2e+1 28 Vitis vinifera 1621961_at BQ798768 - - 1e+0 At3g09700 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.16 1e-16 85 Zea mays Zm.11141.1.S1_at AY106810.1 hypothetical protein LOC100272903 - 1e-7 At1g64780 ATAMT1 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage