Gene omics information

Query gene ID	Os04g0349700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.36	44.0	Os04g0349700	AK119351.1	-	Leucine-rich repeat, typical subtype containingprotein	1e-1	At4g22170	F-box family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os02g0111600	AK100387.1	-	EGF-like calcium-binding domain containing protein	8e-5	At1g06700	serine/threonine protein kinase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os09g0471500	AK111541.1	-	Protein kinase domain containing protein	5e-3	At1g16150	WAKL4 (WALL ASSOCIATED KINASE-LIKE 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	Os02g0282000	9630.m01703	-	Disease resistance protein family protein	2e+0	At2g21900	WRKY59	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os07g0167500	NM_186477.1	-	Conserved hypothetical protein	4e+0	At3g53200	AtMYB27 (myb domain protein 27)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	Os02g0153900	AK111546.1	-	Protein kinase domain containing protein	2e-12	At1g72300	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
56.3	99.9	GSM357133	14-day-old seedling, rep 2	GSE14275	Expression data for heat shock in rice seedlings
22.2	99.3	GSM421704	XOO, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
18.9	99.0	GSM421684	XOC, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.5	98.8	GSM421724	MOCK, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.5	98.5	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.4	98.5	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM421686	XOC, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.8	98.1	GSM357122	14-day-old seedling, rep 1	GSE14275	Expression data for heat shock in rice seedlings
10.7	98.1	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM357134	14-day-old seedling, rep 3	GSE14275	Expression data for heat shock in rice seedlings

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	3e-28	129	Os01g0160200	AK073444.1	-	Leucine-rich repeat, plant specific containingprotein	4e-1	At3g11080	AtRLP35 (Receptor Like Protein 35)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	1e-8	63	Os01g0163000	AK072107.1	-	Leucine-rich repeat, typical subtype containingprotein	2e+0	At4g37840	HKL3 (HEXOKINASE-LIKE 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	5e-8	61	Os01g0158600	AK070173.1	-	Leucine-rich repeat, typical subtype containingprotein	4e-1	At3g57580	F-box family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	2e-10	69	Os12g0211500	AK103606.1	-	Leucine-rich repeat, plant specific containingprotein	2e+0	At2g19290	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-8	63	Os01g0162900	AK064678.1	-	Conserved hypothetical protein	1e+0	At4g37840	HKL3 (HEXOKINASE-LIKE 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	5e-8	61	Os12g0211600	AK106666.1	-	Conserved hypothetical protein	3e-1	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-7	59	Os12g0223000	AK110855.1	-	Hypothetical protein	2e-2	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-8	61	Os04g0480500	AK119334.1	-	Leucine-rich repeat, plant specific containingprotein	1e-1	At1g48620	HON5 (High Mobility Group Family A 5)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	40	Arabidopsis thaliana	At4g22170	828307	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	2e+0	36	Glycine max	GmaAffx.43321.1.S1_at	BI699032	-	-	3e+0	At3g23630	ATIPT7	C.G.	S.X.	Please select
0.01	3e+0	34	Hordeum vulgare	Contig2487_s_at	Contig2487	-	-	2e-27	At1g09780	2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative	C.G.	S.X.	Please select
0.01	2e+0	36	Populus trichocarpa	PtpAffx.56970.1.A1_at	CV243661	-	-	2e-9	At5g65460	kinesin motor protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	2e+0	36	Triticum aestivum	TaAffx.110945.1.S1_at	CA638048	-	-	8e+0	At1g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	5e-1	36	Vitis vinifera	1622806_at	CB009073	hypothetical protein LOC100258640	-	6e-87	At1g66430	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.01	3e+0	34	Zea mays	Zm.9119.1.A1_at	BM350713	-	-	6e+0	At5g44570	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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