CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0349600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 78.0 Os04g0349600 AK070947.1 - TPR-like domain containing protein 2e-2 At3g19160 ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) S.X. H.G.
0.55 73.7 Os03g0593200 9631.m03811 - Protein of unknown function DUF21 domaincontaining protein 4e-46 At1g55930 CBS domain-containing protein / transporter associated domain-containing protein S.X. H.G.
0.50 68.0 Os01g0104600 AK100613.1 - Light-mediated development protein DET1(Deetiolated1) 7e-5 At4g10180 DET1 (DE-ETIOLATED 1) S.X. H.G.
0.47 62.3 Os08g0215200 AK072536.1 - En/Spm-like transposon proteins family protein 1e-1 At1g10950 endomembrane protein 70, putative S.X. H.G.
0.44 58.1 Os04g0466100 AK064543.1 - Cell division protein FtsH-like protein 3e-7 At3g02450 cell division protein ftsH, putative S.X. H.G.
0.08 4.2 Os01g0613900 AK119181.1 - Protein of unknown function UPF0052 and CofDfamily protein 1e-15 At2g34090 MEE18 (maternal effect embryo arrest 18) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.0 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.6 99.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.6 99.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 0 1959 Os04g0351300 9632.m02671 - Protein prenyltransferase domain containingprotein 1e+0 At5g57740 XBAT32 C.G. S.X.
0.52 2e-149 531 Os04g0350000 AK063387.1 - TPR-like domain containing protein 3e-2 At1g62680 - C.G. S.X.
0.02 4e-5 52 Os10g0499800 AK099535.1 - Fertility restorer 1e-1 At4g35710 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-2 42 Arabidopsis thaliana At3g19160 821450 ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) Encodes cytokinin synthase. - - - C.G. S.X.
0.01 5e-1 38 Glycine max GmaAffx.14915.1.S1_at BE057713 - - 3e-5 At1g66260 RNA and export factor-binding protein, putative C.G. S.X.
0.02 6e-1 36 Hordeum vulgare Contig18036_at Contig18036 - - 4e-4 At4g32020 unknown protein C.G. S.X.
0.02 7e-3 44 Populus trichocarpa PtpAffx.209580.1.S1_at pmrna18959 hypothetical protein - 5e-12 At1g11710 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.06 5e-3 44 Triticum aestivum TaAffx.91603.1.A1_at BJ311235 - - 1e+0 At3g60060 - C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1616354_at CB913437 hypothetical protein LOC100251981 - 6e-6 At2g24590 splicing factor, putative C.G. S.X.
0.01 9e-3 42 Zea mays Zm.728.1.A1_at BM338202 GR1a protein - 5e-1 At4g12550 AIR1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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