Gene omics information

Query gene ID	Os04g0348200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	73.7	Os04g0348200	9632.m02648	-	-	2e+0	At5g35300	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os07g0453300	9635.m02607	-	-	3e+0	At1g67980	CCoAMT	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os05g0527600	9633.m04222	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	7e-4	At1g73880	UGT89B1 (UDP-GLUCOSYL TRANSFERASE 89B1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os07g0226700	9635.m01218	-	-	1e+0	At3g15750	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os01g0521300	NM_193661.1	-	Hypothetical protein	3e+0	At1g33710	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	32.7	Os01g0283400	AK119993.1	-	Conserved hypothetical protein	3e-1	At5g06480	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
54.9	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
31.4	99.7	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.4	99.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.1	99.6	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.9	99.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0	99.5	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.7	99.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.0	99.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8	99.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.6	99.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	5e-12	73	Os09g0287000	AK106057.1	-	-	1e-1	At1g54200	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	5e-2	40	Os02g0435133	9630.m02218	-	-	2e+0	At5g35300	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2e-5	52	Os05g0426800	9633.m03275	-	Conserved hypothetical protein	5e-6	At1g09812	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	5e-2	40	Os12g0602600	9640.m04007	-	-	8e-1	At4g00670	DNA binding	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2e-11	71	Os08g0565200	AY339375.1	-	Pathogenesis-related transcriptional factor andERF domain containing protein	4e-8	At1g75490	DNA binding / transcription factor	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-10	67	Os01g0366300	AK064115.1	-	ARK3 product/receptor-like serine/threonineprotein kinase ARK3	2e-8	At3g16030	CES101 (CALLUS EXPRESSION OF RBCS 101)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1e-6	56	Os08g0537900	AK119425.1	-	AP2 domain containing protein RAP2.2 (Fragment)	6e-12	At1g52630	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-6	56	Os06g0215000	AK070686.1	-	Conserved hypothetical protein	9e-1	At3g42310	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-5	52	Os09g0407900	AK070971.1	-	Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein	2e-33	At4g22285	ubiquitin thiolesterase/ zinc ion binding	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-2	40	Os01g0928800	AK120617.1	-	Serine palmitoyltransferase	2e-17	At5g23670	LCB2	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	34	Arabidopsis thaliana	At5g35300	833484	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.30164.1.A1_at	AW348715	-	-	1e-2	At2g36570	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig19917_at	Contig19917	-	-	1e+1	At5g18661	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	Populus trichocarpa	PtpAffx.218727.1.S1_at	pmrna34449	hypothetical protein	-	7e-1	At5g15970	KIN2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-1	36	Triticum aestivum	TaAffx.36710.1.S1_at	CA736423	-	-	8e-1	At4g27490	3' exoribonuclease family domain 1-containing protein	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1620341_at	CD714820	-	-	1e+0	At5g17100	-	C.G.	S.X.	Please select
0.06	3e+0	32	Zea mays	ZmAffx.799.1.S1_at	AI770347	hypothetical protein LOC100275354	-	5e-2	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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