CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0339000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0339000 9632.m02542 - Cytochrome P450 family protein 8e-1 At3g26300 CYP71B34 S.X. H.G.
0.03 1.4 Os04g0572400 AY114110.1 - CRT/DRE binding factor 1 5e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) S.X. H.G.
0.02 1.0 Os03g0197200 AK073216.1 - Sorbitol transporter 1e-5 At3g18830 ATPLT5 (POLYOL TRANSPORTER 5) S.X. H.G.
0.01 0.5 Os01g0795200 NM_190892.1 - Subtilase 8e-2 At4g10520 subtilase family protein S.X. H.G.
0.01 0.5 Os01g0298400 9629.m01886 - MYB9 2e-6 At3g27809 unknown protein S.X. H.G.
0.00 0.1 Os08g0256700 AK108811.1 - Conserved hypothetical protein 1e-2 At2g23320 WRKY15 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
118.1 100.0 GSM375775 slr1 (k1001)_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
102.3 100.0 GSM375777 slr1 (k1001)_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
82.0 99.9 GSM375773 slr1 (k1001)_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.1 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.68 8e-129 462 Os07g0217600 AK065971.1 - Cytochrome P450 family protein 6e-2 At3g26300 CYP71B34 C.G. S.X.
0.66 0 730 Os07g0218700 AK108382.1 - Cytochrome P450 family protein 4e-3 At3g32047 electron carrier/ heme binding / iron ion binding / monooxygenase C.G. S.X.
0.47 1e-41 173 Os07g0218900 9635.m01164 - - 1e-1 At3g26300 CYP71B34 C.G. S.X.
0.33 2e-39 165 Os10g0440000 AK067591.1 - Cytochrome P450 family protein 9e-1 At3g26230 CYP71B24 C.G. S.X.
0.32 8e-27 123 Os02g0570700 AK070167.1 - Cytochrome P450 family protein 6e-5 At3g32047 electron carrier/ heme binding / iron ion binding / monooxygenase C.G. S.X.
0.30 2e-34 149 Os02g0529800 9630.m03109 - Cytochrome P450 family protein 3e-3 At2g24180 CYP71B6 (CYTOCHROME P450 71B6) C.G. S.X.
0.16 9e-104 379 Os07g0217800 AK108654.1 - Conserved hypothetical protein 1e-1 At2g15260 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.16 9e-104 379 Os09g0337500 AK102339.1 - Conserved hypothetical protein 1e-1 At2g15260 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Arabidopsis thaliana At3g26300 822234 CYP71B34 putative cytochrome P450 - - - C.G. S.X.
0.03 3e-1 38 Glycine max GmaAffx.76115.1.S1_s_at BE021541 - - 1e+0 At3g03830 auxin-responsive protein, putative C.G. S.X.
0.03 4e-7 56 Hordeum vulgare Contig25596_at Contig25596 - - 2e+0 At1g13380 unknown protein C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.12443.3.A1_at BU896102 - - 9e-5 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) C.G. S.X.
0.04 2e-4 48 Triticum aestivum TaAffx.81608.1.S1_at CA684076 - - 4e+0 At5g02750 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1619359_at CF404659 hypothetical protein LOC100258799 - 3e-1 At5g24910 CYP714A1 C.G. S.X.
0.07 8e-2 38 Zea mays Zm.14226.1.A1_at BM337251 hypothetical protein LOC100273457 - 3e-2 At3g20100 CYP705A19 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage