CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0308100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os04g0308100 AK100568.1 - The start codon is not identified. 2e-3 At1g34315 unknown protein S.X. H.G.
0.31 34.5 Os09g0573200 AK072865.1 - Conserved hypothetical protein 1e+0 At1g11850 unknown protein S.X. H.G.
0.26 25.6 Os08g0254200 AK066186.1 - Hypothetical protein 5e+0 At5g27840 TOPP8 S.X. H.G.
0.20 16.5 Os04g0350000 AK063387.1 - TPR-like domain containing protein 3e-2 At1g62680 - S.X. H.G.
0.16 11.3 Os11g0452400 AK073190.1 - Conserved hypothetical protein 1e-2 At4g10970 unknown protein S.X. H.G.
0.16 11.3 Os11g0588400 AK066872.1 - Disease resistance protein family protein 4e-1 At3g50550 unknown protein S.X. H.G.
0.11 6.5 Os11g0161000 AK065519.1 - NB-ARC domain containing protein 1e-1 At2g47530 - S.X. H.G.
0.07 3.7 Os04g0648500 AK071891.1 - BRCA1-associated 2 domain containing protein 2e-14 At2g26000 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.6 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.7 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.1 97.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.2 97.1 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
5.8 97.0 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.7 96.9 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.4 96.8 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.0 96.6 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
4.6 96.3 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
4.4 96.2 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 0 845 Os04g0307500 AK067041.1 - Protein kinase domain containing protein 2e-6 At3g59350 serine/threonine protein kinase, putative C.G. S.X.
0.29 6e-126 454 Os05g0215500 AK070424.1 - Hypothetical protein 3e+0 At5g46877 - C.G. S.X.
0.25 4e-45 184 Os04g0286300 AK067467.1 - Protein kinase domain containing protein 2e-6 At5g18500 protein kinase family protein C.G. S.X.
0.20 2e-50 202 Os10g0180800 AK099018.1 - EGF-like calcium-binding domain containing protein 7e-6 At1g06700 serine/threonine protein kinase, putative C.G. S.X.
0.20 7e-20 99 Os01g0502800 AK059957.1 - - 2e-1 At5g53720 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.17 4e-25 117 Os04g0366400 9632.m02815 - - 4e-6 At1g21245 wall-associated kinase-related C.G. S.X.
0.17 4e-22 107 Os04g0366000 CB632726 - EGF-like calcium-binding domain containing protein 1e-7 At1g48220 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.16 4e-74 280 Os02g0213400 AK060456.1 - Conserved hypothetical protein 4e+0 At5g06660 unknown protein C.G. S.X.
0.10 5e-27 123 Os09g0130300 AK066394.1 - Conserved hypothetical protein 2e+0 At1g12938 unknown protein C.G. S.X.
0.01 7e-4 48 Os08g0501700 AK067363.1 - EGF-like calcium-binding domain containing protein 2e-3 At1g21210 WAK4 (wall associated kinase 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-3 46 Arabidopsis thaliana At1g34315 840332 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.01 5e-2 42 Glycine max HgAffx.23448.1.S1_at CB826410 - - 5e+0 At5g01910 unknown protein C.G. S.X.
0.01 2e-2 42 Hordeum vulgare Contig18504_s_at Contig18504 - - 2e-5 At1g60940 SNRK2.10 (SNF1-RELATED PROTEIN KINASE 2.10) C.G. S.X.
0.01 3e-3 46 Populus trichocarpa PtpAffx.149264.1.S1_at CF231887 - - 1e-1 At2g34925 CLE42 (CLAVATA3/ESR-RELATED 42) C.G. S.X.
0.01 6e-1 38 Triticum aestivum TaAffx.80662.1.S1_at CA694232 - - 4e+0 At1g75630 AVA-P4 C.G. S.X.
0.01 4e-2 40 Vitis vinifera 1610425_at CF512865 - - 4e+0 At4g08280 - C.G. S.X.
0.01 1e+0 36 Zea mays ZmAffx.259.1.S1_s_at AI668215 Glycine-rich protein - 9e-1 At5g40970 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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