Gene omics information

Query gene ID	Os04g0305700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os04g0305700	AK068128.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-1	At2g43010	PIF4 (phytochrome interacting factor 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os01g0878900	AK104652.1	-	4,5-DOPA dioxygenase extradiol	2e+0	At5g06210	RNA-binding protein, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os01g0106300	AK119550.1	-	Isoflavone reductase homolog IRL (EC 1.3.1.-)	6e-1	At2g34200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os06g0149100	AK099064.1	-	Lipolytic enzyme, G-D-S-L family protein	3e+0	At5g22810	GDSL-motif lipase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os03g0832800	AK062843.1	-	Phospholipid/glycerol acyltransferase familyprotein	4e-2	At4g00400	GPAT8 (glycerol-3-phosphate acyltransferase 8)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os10g0469900	AK105737.1	-	TGF-beta receptor, type I/II extracellular regionfamily protein	1e-3	At5g46050	PTR3 (PEPTIDE TRANSPORTER 3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	98.2	GSM281585	Rice Zhonghua11, biological rep3	GSE11175	Comparison of transcriptome profile between wild-type and dst mutant plants
9.2	97.9	GSM421685	XOC, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.1	97.9	GSM281583	Rice Zhonghua11, biological rep1	GSE11175	Comparison of transcriptome profile between wild-type and dst mutant plants
9.1	97.9	GSM421725	MOCK, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.0	97.8	GSM421703	XOO, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.5	97.7	GSM421683	XOC, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.5	97.7	GSM421705	XOO, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.7	97.6	GSM421724	MOCK, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.3	97.5	GSM421684	XOC, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.2	97.4	GSM281584	Rice Zhonghua11, biological rep2	GSE11175	Comparison of transcriptome profile between wild-type and dst mutant plants

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	9e-95	349	Os09g0379400	9637.m01819	-	-	3e+0	At3g55790	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	8e-12	73	Os09g0329200	9637.m01335	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	7e-1	At5g63480	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-14	81	Os07g0622400	AK108114.1	-	Conserved hypothetical protein	1e-1	At2g17450	RHA3A	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-8	61	Os05g0527900	AK110876.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	8e-1	At3g21790	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	3e-14	81	Os07g0622300	9635.m04307	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-1	At1g22380	AtUGT85A3 (UDP-glucosyl transferase 85A3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	3e-8	61	Os04g0523600	AK070948.1	-	-	9e-4	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At2g43010	818903	PIF4 (phytochrome interacting factor 4)	Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-2	40	Glycine max	GmaAffx.47330.1.S1_at	BU926438	-	-	2e-1	At4g09840	unknown protein	C.G.	S.X.	Please select
0.05	8e-9	61	Hordeum vulgare	Contig11604_at	Contig11604	-	-	1e+0	At2g07820	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	42	Populus trichocarpa	PtpAffx.11317.2.A1_a_at	BU878325	hypothetical protein	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	2e-14	81	Triticum aestivum	TaAffx.92123.1.S1_at	BJ279960	-	-	1e+0	At5g46430	60S ribosomal protein L32 (RPL32B)	C.G.	S.X.	Please select
0.02	7e-2	38	Vitis vinifera	1608932_at	CB982469	hypothetical protein LOC100248024	-	7e-2	At5g25890	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	C.G.	S.X.	Please select
0.04	7e-9	61	Zea mays	Zm.7422.1.A1_at	CO525742	anthocyanidin 3-O-glucosyltransferase	-	2e+0	At2g01250	60S ribosomal protein L7 (RPL7B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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