CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0304400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 77.0 Os04g0304400 AK102927.1 - MADS-box protein AGL16-II 6e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) S.X. H.G.
0.73 91.1 Os11g0708100 AK060544.1 - Laccase (EC 1.10.3.2) (Fragment) 1e-8 At5g01190 LAC10 (laccase 10) S.X. H.G.
0.47 62.3 Os10g0165300 NM_195010.1 - Cytochrome P450 family protein 1e-2 At2g45580 CYP76C3 S.X. H.G.
0.39 48.3 Os11g0126800 AK059453.1 - Hypothetical protein 9e-2 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) S.X. H.G.
0.27 27.5 Os01g0680200 AK121881.1 - - 2e-1 At1g54215 proline-rich family protein S.X. H.G.
0.26 25.6 Os01g0740500 9629.m05236 - Transferrin receptor-like dimerisation regiondomain containing protein 2e-5 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) S.X. H.G.
0.20 16.5 Os02g0758800 AK071537.1 - Plastocyanin-like domain containing protein 5e-4 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.7 99.8 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
26.1 99.5 GSM262015 Nipponbare, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
26.1 99.5 GSM262014 Nipponbare, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
25.9 99.5 GSM262010 Nipponbare, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
25.4 99.5 GSM262018 Nipponbare, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.5 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM359922 Pokkali root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.5 97.9 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.5 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 3e-38 161 Os08g0431900 AY345220.1 - Transcription factor MADS23 6e-6 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.21 2e-36 155 Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.15 6e-30 133 Os04g0461300 9632.m03661 - MADS-box transcription factor MADS2 3e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.14 1e-15 85 Os03g0186600 AY345222.1 - Transcription factor, MADS-box domain containingprotein 1e-4 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.13 2e-20 101 Os01g0201700 AY553724.1 - MADS box protein 2e-10 At4g18960 AG (AGAMOUS) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-7 56 Arabidopsis thaliana At3g57230 824890 AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. - - - C.G. S.X.
0.05 1e-2 42 Glycine max GmaAffx.79004.1.S1_at BU761215 MADS-box protein - 2e-17 At4g18960 AG (AGAMOUS) C.G. S.X.
0.12 5e-9 61 Hordeum vulgare Contig12483_at Contig12483 - - 2e-3 At3g57390 AGL18 C.G. S.X.
0.12 8e-4 46 Populus trichocarpa PtpAffx.205416.1.S1_at pmrna10719 hypothetical protein - 2e-21 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.13 1e-14 81 Triticum aestivum Ta.27569.1.A1_at CD890142 MADS-box transcription factor TaAGL35 - 8e-2 At5g51870 AGL71 (AGAMOUS-LIKE 71) C.G. S.X.
0.05 3e-6 52 Vitis vinifera 1621836_at AF373604.1 MADS-box protein 5 - 2e-9 At4g09960 STK (SEEDSTICK) C.G. S.X.
0.16 1e-18 93 Zea mays Zm.15206.1.A1_at BM268642 - - 6e-18 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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