CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0303500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.98 100.0 Os04g0303500 9632.m02208 - Protein kinase domain containing protein 5e-3 At5g59000 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.60 79.7 Os10g0466100 9638.m02863 - Conserved hypothetical protein 4e+0 At5g46430 60S ribosomal protein L32 (RPL32B) S.X. H.G.
0.59 78.0 Os07g0583900 9635.m03939 - - 3e+0 At3g54830 amino acid transporter family protein S.X. H.G.
0.56 76.3 Os11g0655100 AK063746.1 - Hypothetical protein 9e-1 At5g49350 unknown protein S.X. H.G.
0.54 71.9 Os04g0691300 9632.m05815 - - 1e-1 At1g33280 ANAC015 (Arabidopsis NAC domain containing protein 15) S.X. H.G.
0.53 71.3 Os06g0131200 9634.m00318 - - 1e+1 At5g53592 - S.X. H.G.
0.53 71.3 Os02g0211200 9630.m00079 - Protein kinase domain containing protein 7e+0 At5g39390 leucine-rich repeat family protein / protein kinase family protein S.X. H.G.
0.52 69.6 Os05g0395700 9633.m03019 - - 2e+0 At4g31920 ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10) S.X. H.G.
0.52 69.6 Os01g0501100 NM_196452.1 - - 8e+0 At4g39540 shikimate kinase family protein S.X. H.G.
0.51 68.7 Os01g0295000 9633.m03469 - - 3e-1 At2g41130 basic helix-loop-helix (bHLH) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.5 99.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.1 99.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.8 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.8 99.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.3 99.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.4 99.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.2 99.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.6 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.4 99.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 0 1110 Os04g0303100 9632.m05838 - Protein kinase domain containing protein 8e-5 At1g16670 protein kinase family protein C.G. S.X.
0.50 1e-159 565 Os04g0302000 9632.m02192 - - 2e-5 At4g32300 SD2-5 (S-DOMAIN-2 5) C.G. S.X.
0.24 0 868 Os04g0302300 AK072639.1 - Conserved hypothetical protein 5e-1 At4g04500 protein kinase family protein C.G. S.X.
0.16 8e-56 220 Os04g0302400 AK069467.1 - Conserved hypothetical protein 6e-2 At3g44950 glycine-rich protein C.G. S.X.
0.15 1e-14 83 Os01g0204100 NM_188329.1 - - 7e-5 At3g58690 protein kinase family protein C.G. S.X.
0.10 6e-26 121 Os04g0303200 AK064152.1 - Hypothetical protein 1e+1 At5g59160 TOPP2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-3 44 Arabidopsis thaliana At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA - - - C.G. S.X.
0.02 5e-4 48 Glycine max GmaAffx.73446.1.S1_at BI975017 - - 3e+0 At5g05910 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.11 3e-21 103 Hordeum vulgare Contig7440_s_at Contig7440 - - 1e-4 At3g02810 protein kinase family protein C.G. S.X.
0.08 2e-9 65 Populus trichocarpa PtpAffx.224824.1.S1_at pmrna43695 - - 7e-2 At2g17220 protein kinase, putative C.G. S.X.
0.06 9e-8 59 Triticum aestivum Ta.25825.1.A1_at CD453373 - - 9e-2 At1g48320 thioesterase family protein C.G. S.X.
0.06 7e-6 52 Vitis vinifera 1620691_at AY427150.1 - - 1e-3 At4g28670 protein kinase family protein C.G. S.X.
0.07 2e-4 48 Zea mays Zm.5225.1.A1_at AI615012 hypothetical protein LOC100273591 - 4e-2 At5g48740 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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