CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0302400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.87 96.6 Os04g0302400 AK069467.1 - Conserved hypothetical protein 6e-2 At3g44950 glycine-rich protein S.X. H.G.
0.95 99.6 Os11g0501300 9639.m02775 - - 4e-1 At1g65541 unknown protein S.X. H.G.
0.83 95.8 Os09g0349800 9637.m01547 - Protein kinase domain containing protein 1e+0 At5g66710 protein kinase, putative S.X. H.G.
0.82 95.0 Os06g0323600 9634.m02142 - - 2e-1 At2g18500 OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7) S.X. H.G.
0.82 95.0 Os08g0450500 9636.m03506 - - 2e+0 At5g02650 unknown protein S.X. H.G.
0.82 95.0 Os08g0362850 9636.m02719 - - 2e+0 At3g14670 unknown protein S.X. H.G.
0.80 94.6 Os05g0123000 9633.m00237 - LOB domain protein 1 9e-4 At1g31320 LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) S.X. H.G.
0.78 93.4 Os07g0567500 NM_186364.1 - Conserved hypothetical protein 2e+0 At5g05230 ubiquitin-protein ligase S.X. H.G.
0.77 93.1 Os09g0319800 AK066759.1 - Terpenoid cylases/protein prenyltransferasealpha-alpha toroid domain containing protein 6e-1 At4g19910 Toll-Interleukin-Resistance (TIR) domain-containing protein S.X. H.G.
0.76 92.2 Os10g0334800 9638.m01577 - - 3e+1 At5g35230 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
310.5 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
88.9 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
2.8 94.3 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
2.3 93.0 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
2.1 92.4 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
1.7 90.6 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
1.4 88.7 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
1.2 86.9 GSM99880 TCHW P22_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
1.2 86.9 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
0.7 79.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 2e-77 291 Os04g0303200 AK064152.1 - Hypothetical protein 1e+1 At5g59160 TOPP2 C.G. S.X.
0.34 3e-147 523 Os04g0302300 AK072639.1 - Conserved hypothetical protein 5e-1 At4g04500 protein kinase family protein C.G. S.X.
0.16 1e-91 339 Os04g0303100 9632.m05838 - Protein kinase domain containing protein 8e-5 At1g16670 protein kinase family protein C.G. S.X.
0.16 6e-56 220 Os04g0303500 9632.m02208 - Protein kinase domain containing protein 5e-3 At5g59000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.15 9e-89 329 Os04g0302000 9632.m02192 - - 2e-5 At4g32300 SD2-5 (S-DOMAIN-2 5) C.G. S.X.
0.01 3e-2 42 Os06g0232000 AB110192.1 - Hypothetical protein 2e-4 At5g39570 unknown protein C.G. S.X.
0.01 1e-1 40 Os01g0289600 9629.m01807 - DNA-binding WRKY domain containing protein 3e-4 At4g01720 WRKY47 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 40 Arabidopsis thaliana At3g44950 823630 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.86750.2.S1_at AW234498 - - 2e-1 At4g27250 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family C.G. S.X.
0.02 5e-1 36 Hordeum vulgare Contig13923_at Contig13923 - - 1e+0 At3g61172 LCR8 (Low-molecular-weight cysteine-rich 8) C.G. S.X.
0.02 9e-2 40 Populus trichocarpa PtpAffx.213728.1.S1_at pmrna26793 hypothetical protein - 8e-4 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.32251.1.S1_at CA598178 - - 3e+0 At5g11840 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1621631_at CD009800 - - 5e+0 Atmg00140 - C.G. S.X.
0.01 2e+0 34 Zea mays Zm.13566.1.S1_at CF636948 hypothetical protein LOC100278328 - 5e+0 At1g11608 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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