Gene omics information

Query gene ID	Os04g0295500
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.8	Os04g0295500	AK065384.1	-	Conserved hypothetical protein	4e-1	At1g65040	protein binding / zinc ion binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os02g0178000	AK111625.1	-	SNF1 related protein kinase-like protein	6e-11	At1g01140	CIPK9 (CBL-INTERACTING PROTEIN KINASE 9)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os05g0129800	9633.m00316	-	DNA-binding WRKY domain containing protein	5e-10	At4g24240	WRKY7	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os07g0619400	AK062716.1	-	Calcium-binding EF-hand domain containing protein	9e-2	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	Os08g0113500	AK071052.1	-	No apical meristem (NAM) protein family protein	1e-3	At2g02450	ANAC035 (Arabidopsis NAC domain containing protein 35)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os11g0208900	AK111797.1	-	Leucine rich repeat containing protein kinase	5e-1	At2g17220	protein kinase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.1	98.7	GSM154945	Leaf_DMSO-treatment_30min_replicate 1	GSE6719	Cytokinin responsive genes in rice
16.0	98.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.0	98.3	GSM174885	B FR13 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.9	98.0	GSM154947	Leaf_DMSO-treatment_30min_replicate 3	GSE6719	Cytokinin responsive genes in rice
9.7	98.0	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM174883	A mock 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
7.1	97.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0	97.4	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8	97.3	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	0	749	Os04g0295400	AK067477.1	-	Jacalin-related lectin domain containing protein	8e-3	Atmg00510	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	5e-7	57	Os04g0115800	AK107115.1	-	Hypothetical protein	1e+0	At4g01630	ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	8e-13	77	Os08g0197500	AK068342.1	-	Cyclin-like F-box domain containing protein	2e+0	At3g20900	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	5e-17	91	Os05g0443400	AK072943.1	-	Glycoside hydrolase, family 17 protein	3e-4	At5g42100	ATBG_PAP	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	3e-15	85	Os06g0257200	AK068347.1	-	Signal recognition particle, 9 kDa and 14 kDaprotein family protein	2e+0	At3g49100	signal recognition particle 9 kDa protein, putative / SRP9, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-7	59	Os12g0285100	AK103843.1	-	ARM repeat fold domain containing protein	3e-5	At5g46730	glycine-rich protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	6e-23	111	Os03g0267100	AK120655.1	-	Conserved hypothetical protein	6e-16	At3g46230	ATHSP17.4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-6	56	Os10g0403400	AK100194.1	-	Hypothetical protein	7e-1	At4g33660	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	4e-1	38	Os04g0166000	AK101349.1	-	Conserved hypothetical protein	5e-1	At2g32380	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-4	50	Os05g0215600	AK066642.1	-	Conserved hypothetical protein	1e-8	At2g46220	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-1	38	Arabidopsis thaliana	At1g65040	842812	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MPOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	2e+0	36	Glycine max	GmaAffx.16846.1.A1_at	BU546635	-	-	6e+0	At5g07220	ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3)	C.G.	S.X.	Please select
0.01	7e-1	36	Hordeum vulgare	HVSMEl0002I06r2_at	HVSMEl0002I06r2	-	-	1e+0	At2g19730	60S ribosomal protein L28 (RPL28A)	C.G.	S.X.	Please select
0.01	5e-1	38	Populus trichocarpa	PtpAffx.42026.1.A1_at	CV269665	hypothetical protein	-	1e+0	At1g05290	transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e-7	59	Triticum aestivum	TaAffx.30713.1.S1_at	CA622707	-	-	2e+1	At5g64120	peroxidase, putative	C.G.	S.X.	Please select
0.01	4e-1	36	Vitis vinifera	1618213_at	CF203873.1	hypothetical protein LOC100250647	-	5e-21	At1g09740	ethylene-responsive protein, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.16240.1.A1_s_at	BM267199	hypothetical protein LOC100280007	-	5e+0	At2g20585	NFD6 (NUCLEAR FUSION DEFECTIVE 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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