CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0293300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.96 99.7 Os04g0293300 AK111082.1 - Tropinone reductase-I (EC 1.1.1.206) (TR-I)(Tropine dehydrogenase) 3e-1 At4g08593 unknown protein S.X. H.G.
0.57 77.0 Os03g0748300 AK068519.1 - Galactose mutarotase-like domain containingprotein 5e-2 At3g15780 unknown protein S.X. H.G.
0.57 77.0 Os08g0425200 AK099569.1 - Conserved hypothetical protein 1e-1 At4g11870 unknown protein S.X. H.G.
0.56 76.3 Os01g0784700 AY327041.1 - Receptor-like kinase 2e-6 At4g21380 ARK3 (A. THALIANA RECEPTOR KINASE 3) S.X. H.G.
0.55 73.7 Os03g0856100 AK067137.1 - TPR-like domain containing protein 1e+0 At5g46730 glycine-rich protein S.X. H.G.
0.54 71.9 Os07g0105600 AK068377.1 - Photosystem II oxygen evolving complex proteinPsbQ family protein 1e-1 At5g56840 DNA-binding family protein S.X. H.G.
0.53 71.3 Os02g0731700 AK120314.1 - CONSTANS-like 1 protein 1e-6 At1g68520 zinc finger (B-box type) family protein S.X. H.G.
0.51 68.7 Os01g0676200 AK070436.1 - Conserved hypothetical protein 2e+0 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein S.X. H.G.
0.51 68.7 Os02g0773500 AK062694.1 - Conserved hypothetical protein 1e-3 At5g56950 NAP1 S.X. H.G.
0.51 68.7 Os01g0920300 AK067201.1 - Conserved hypothetical protein 3e-7 At3g27180 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.4 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.0 99.6 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
24.0 99.4 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
23.1 99.3 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
22.1 99.3 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
16.1 98.7 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
16.1 98.7 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
12.7 98.4 GSM159272 Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
12.6 98.4 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
12.3 98.3 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 2e-43 176 Os11g0443700 AK108232.1 - Tropinone reductase-I (EC 1.1.1.206) (TR-I)(Tropine dehydrogenase) 6e-1 At1g07440 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.23 9e-12 71 Os11g0439100 9639.m02239 - Glucose/ribitol dehydrogenase family protein 3e+0 At2g23430 ICK1 C.G. S.X.
0.18 1e-10 67 Os11g0652900 9639.m04005 - Tropinone reductase II 6e-3 At1g07440 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.12 5e-32 139 Os11g0438700 AK073524.1 - Glucose/ribitol dehydrogenase family protein 3e-1 At3g13000 transcription factor C.G. S.X.
0.08 9e-12 71 Os01g0930900 BI804387 - Tropinone reductase homolog (EC 1.1.1.-) (P29X) 2e+0 Atcg00130 - C.G. S.X.
0.05 4e-14 79 Os11g0438000 AK073048.1 - Conserved hypothetical protein 2e+0 At5g19090 heavy-metal-associated domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At4g08593 826421 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.06 4e-4 46 Glycine max Gma.2096.2.S1_a_at CA937579 - - 4e-3 At2g29340 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.13 2e-12 71 Hordeum vulgare Contig20405_at Contig20405 - - 2e+0 At2g17442 unknown protein C.G. S.X.
0.06 9e-2 38 Populus trichocarpa Ptp.5162.1.S1_s_at CF936341 hypothetical protein - 7e-10 At2g29290 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.14 7e-8 57 Triticum aestivum TaAffx.123816.2.S1_at CA677017 - - 1e+0 At5g41570 WRKY24 C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1612106_at CB981251 - - 3e+0 At4g24600 unknown protein C.G. S.X.
0.04 2e+0 32 Zea mays Zm.13362.1.S1_at CA828313 calmodulin binding protein - 3e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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