CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0280500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.95 99.6 Os04g0280500 CF332382 - Conserved hypothetical protein 2e+0 At5g15200 40S ribosomal protein S9 (RPS9B) S.X. H.G.
0.50 68.0 Os07g0489300 AK060228.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 3e+0 At2g15320 leucine-rich repeat family protein S.X. H.G.
0.38 46.9 Os06g0108900 AK101029.1 - Homeobox domain containing protein 1e-12 At5g41410 BEL1 (BELL 1) S.X. H.G.
0.36 44.0 Os02g0644900 AK066709.1 - Sodium/potassium/calcium exchanger 4 precursor(Na(+)/K(+)/Ca(2+)- exchange protein 4). Splice isoform 2 1e-12 At2g47600 ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER) S.X. H.G.
0.35 41.7 Os10g0196000 AK068170.1 - Cytochrome P450 family protein 4e+0 At2g40890 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) S.X. H.G.
0.34 40.0 Os01g0574700 NM_193609.1 - - 3e-3 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) S.X. H.G.
0.33 38.8 Os09g0460300 AK071569.1 - Esterase/lipase/thioesterase domain containingprotein 1e-2 At5g06570 hydrolase S.X. H.G.
0.31 34.5 Os04g0561500 AK065953.1 - Prolyl endopeptidase (EC 3.4.21.26) (Post-prolinecleaving enzyme) (PE) 1e-19 At1g76140 serine-type endopeptidase/ serine-type peptidase S.X. H.G.
0.31 34.5 Os10g0190500 AK070455.1 - Protein of unknown function DUF594 family protein 3e-1 At5g06250 transcription factor S.X. H.G.
0.30 32.7 Os01g0555100 AK111255.1 - Zn-finger, Ran-binding domain containing protein 5e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
120.1 100.0 GSM421719 MOCK, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
45.1 99.9 GSM421723 MOCK, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
44.7 99.9 GSM421684 XOC, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
22.2 99.3 GSM421699 XOO, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
21.9 99.3 GSM421711 MOCK, 4 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
21.1 99.2 GSM421707 MOCK, 2 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
15.9 98.7 GSM421697 XOO, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.0 98.3 GSM421675 XOC, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.8 98.3 GSM421686 XOC, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.6 97.9 GSM262010 Nipponbare, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-3 44 Os02g0250100 9630.m01420 - - 3e+0 At5g12380 annexin, putative C.G. S.X.
0.03 4e-3 44 Os06g0132500 9634.m00329 - Alpha/beta hydrolase family protein 1e-2 At1g64670 BDG1 (BODYGUARD1) C.G. S.X.
0.03 2e-2 42 Os01g0820700 9629.m05948 - - 7e+0 At5g64810 WRKY51 C.G. S.X.
0.03 4e+0 32 Os05g0528200 AK062985.1 - - 2e-8 At1g16740 ribosomal protein L20 family protein C.G. S.X.
0.02 2e-2 42 Os01g0274800 AK107461.1 - The start codon is not identified. 2e-7 At1g26780 myb family transcription factor (MYB117) C.G. S.X.
0.02 2e-2 42 Os05g0375700 9633.m02841 - - 2e-1 At5g33340 CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1) C.G. S.X.
0.01 4e+0 32 Os01g0530400 AK103724.1 - Glutaredoxin-related protein family protein 2e+0 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
0.01 4e+0 32 Os01g0966000 AK067542.1 - ATPase 3, plasma membrane-type (EC 3.6.3.6)(Proton pump 3) 8e-38 At5g37830 OXP1 (OXOPROLINASE 1) C.G. S.X.
0.01 4e+0 32 Os02g0100300 9630.m00003 - HSP associated protein like 2e-8 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e+0 32 Arabidopsis thaliana At5g15200 831372 40S ribosomal protein S9 (RPS9B) F:structural constituent of ribosome;P:translation;C:in 7 components;POMBFA - - - C.G. S.X.
0.05 3e+0 32 Glycine max GmaAffx.79645.1.S1_at AI441660 - - 3e-16 At1g75500 nodulin MtN21 family protein C.G. S.X.
0.06 9e-1 32 Hordeum vulgare HS05F01u_x_at HS05F01u - - 2e+0 At5g66090 unknown protein C.G. S.X.
0.04 2e-1 36 Populus trichocarpa PtpAffx.222204.1.S1_at pmrna39465 hypothetical protein - 4e-56 At3g19420 ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) C.G. S.X.
0.06 2e+0 32 Triticum aestivum Ta.17458.1.S1_at CA621009 - - 5e-1 At5g25470 DNA binding C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1608382_at CF405318 - - 4e+0 At5g54215 - C.G. S.X.
0.06 3e+0 30 Zea mays Zm.6605.1.A1_at AI444684 hypothetical protein LOC100191572 - 3e+0 At1g22470 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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