CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0278900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os04g0278900 AK108886.1 - Dihydrouridine synthase, DuS family protein 2e-3 At3g63510 FAD binding / catalytic/ tRNA dihydrouridine synthase S.X. H.G.
0.91 98.9 Os09g0248000 AK120327.1 - Conserved hypothetical protein 1e-7 At2g03800 GEK1 (GEKO1) S.X. H.G.
0.67 87.2 Os01g0704700 NM_191637.1 - Chloride channel protein CLC-e (AtCLC-e) 4e-3 At4g35440 CLC-E (CHLORIDE CHANNEL E) S.X. H.G.
0.67 87.2 Os01g0715000 AK120627.1 - The start codon is not identified. 6e-8 At5g20220 zinc knuckle (CCHC-type) family protein S.X. H.G.
0.55 73.7 Os01g0960300 BI813093 - Glucose inhibited division protein A 7e+0 At5g57510 unknown protein S.X. H.G.
0.40 51.1 Os12g0193100 AK068584.1 - Subtilisin inhibitor I (ASI-I) [Contains:Subtilisin inhibitor II (ASI-II)] 6e-1 At3g61840 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.3 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.2 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-8 61 Os02g0235700 9630.m01305 - - 4e+0 At4g29020 glycine-rich protein C.G. S.X.
0.03 4e-6 54 Os02g0456200 9630.m02430 - G1 to S phase transition protein 1 homolog 1e-33 At1g18070 EF-1-alpha-related GTP-binding protein, putative C.G. S.X.
0.02 1e-3 46 Os01g0861700 9629.m06364 - Aldehyde oxidase and xanthine dehydrogenase, a/bhammerhead domain containing protein 7e-1 At4g36240 zinc finger (GATA type) family protein C.G. S.X.
0.02 1e-3 46 Os03g0821200 9631.m05973 - Zn finger protein (Fragment) 5e-29 At2g37590 Dof-type zinc finger domain-containing protein C.G. S.X.
0.02 6e-3 44 Os03g0106000 AK063343.1 - Protein of unknown function UPF0187 family protein 4e-15 At3g61320 unknown protein C.G. S.X.
0.02 4e-1 38 Os11g0223500 9629.m06760 - - 1e+0 At5g14690 unknown protein C.G. S.X.
0.01 6e-5 50 Os12g0557800 AK121691.1 - Protein prenyltransferase domain containingprotein 4e-1 At5g57920 plastocyanin-like domain-containing protein C.G. S.X.
0.01 2e-4 48 Os03g0212700 AK120113.1 - Cytochrome C reductase-processing peptidasesubunit I, MPP subunit I, P55 6e-18 At3g02090 mitochondrial processing peptidase beta subunit, putative C.G. S.X.
0.01 9e-3 44 Os06g0154400 AK067799.1 - Hypothetical protein 3e-7 At1g29120 unknown protein C.G. S.X.
0.01 4e-1 38 Os02g0194300 AK072385.1 - Conserved hypothetical protein 2e-2 At1g51130 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 38 Arabidopsis thaliana At5g47970 834848 nitrogen regulation family protein F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:nucleus, phragmoplast, cytoplasm;BOMFPA - - - C.G. S.X.
0.06 2e-8 61 Glycine max Gma.15017.2.S1_at CD487682 - - 2e-27 At5g47970 nitrogen regulation family protein C.G. S.X.
0.60 0 932 Hordeum vulgare Contig10183_at Contig10183 - - 3e+0 At4g32710 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.05 4e-3 44 Populus trichocarpa PtpAffx.49612.1.A1_at CV278000 hypothetical protein - 1e-35 At3g63510 FAD binding / catalytic/ tRNA dihydrouridine synthase C.G. S.X.
0.37 2e-69 264 Triticum aestivum TaAffx.107844.1.S1_at CA694519 - - 4e+0 At1g09610 unknown protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1616009_at CB910708 - - 3e-1 At5g54370 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.02 5e+0 32 Zea mays Zm.9872.1.A1_at BQ538232 hypothetical protein LOC100277709 - 1e+0 At1g62840 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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