CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0254200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 Os04g0254200 9632.m01640 - - 4e+0 At4g33660 unknown protein S.X. H.G.
0.45 58.8 Os06g0476400 9634.m02694 - - 3e+0 At5g14920 gibberellin-regulated family protein S.X. H.G.
0.44 58.1 Os07g0643500 AK111373.1 - Conserved hypothetical protein 4e-2 At5g06570 hydrolase S.X. H.G.
0.42 53.9 Os10g0127325 9638.m00287 - - 4e+0 At3g49270 unknown protein S.X. H.G.
0.42 53.9 Os05g0187700 9633.m00865 - - 3e-1 At5g67450 AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) S.X. H.G.
0.42 53.9 Os07g0418400 9635.m02244 - - 3e+0 At4g28460 unknown protein S.X. H.G.
0.41 52.4 Os07g0447100 9635.m02558 - - 4e+0 At4g31580 SRZ-22 S.X. H.G.
0.41 52.4 Os02g0766300 9636.m01563 - - 2e+0 At1g12665 - S.X. H.G.
0.40 51.1 Os01g0534100 9629.m03289 - - 3e-1 At4g29020 glycine-rich protein S.X. H.G.
0.40 51.1 Os11g0490500 9639.m02697 - - 1e+0 At5g09750 HEC3 (HECATE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
157.1 100.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
56.2 99.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
40.4 99.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
39.1 99.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.2 99.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.0 99.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-5 50 Os07g0567300 CB621496 - Alpha 1,4-glycosyltransferase conserved regionfamily protein 3e-1 At4g22250 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 7e-3 42 Os01g0112000 9629.m00127 - Conserved hypothetical protein 2e+0 At4g11870 unknown protein C.G. S.X.
0.03 7e-3 42 Os01g0260300 9629.m01542 - - 1e-1 At5g05230 ubiquitin-protein ligase C.G. S.X.
0.03 7e-3 42 Os10g0486300 NM_197084.1 - Zn-finger, U1-like domain containing protein 4e-1 At2g44300 lipid transfer protein-related C.G. S.X.
0.03 3e-2 40 Os08g0484700 CB682631 - Homeodomain-like containing protein 3e-2 At4g20290 unknown protein C.G. S.X.
0.02 2e-3 44 Os05g0551500 AK108248.1 - Conserved hypothetical protein 6e-2 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e+0 32 Arabidopsis thaliana At4g33660 829507 unknown protein F:unknown;P:unknown;C:unknown;MPOFBVA - - - C.G. S.X.
0.04 1e+0 34 Glycine max GmaAffx.52265.1.A1_at CD398990 - - 3e-3 At2g25370 zinc finger protein-related C.G. S.X.
0.10 7e-3 40 Hordeum vulgare EBem08_SQ001_B01_at EBem08_SQ001_B01 - - 2e-3 At1g15800 unknown protein C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.205979.1.S1_at pmrna11852 hypothetical protein - 3e+0 At5g52040 ATRSP41 C.G. S.X.
0.04 6e-2 38 Triticum aestivum TaAffx.51698.1.S1_s_at CA720381 core3ft protein - 4e+0 At4g33480 unknown protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1616960_at CA817459 hypothetical protein LOC100244872 - 2e-5 At5g38520 hydrolase, alpha/beta fold family protein C.G. S.X.
0.05 4e-1 34 Zea mays ZmAffx.929.1.S1_at AI795460 - - 5e-2 At5g17900 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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