Gene omics information

Query gene ID	Os04g0244800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.6	Os04g0244800	AK121488.1	-	Heavy metal transport/detoxification proteindomain containing protein	5e-10	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os01g0846300	AK065949.1	-	Protein phpsphatase 2C (PP2C) (EC 3.1.3.16)	9e-1	At5g59220	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os01g0583100	CA757691	-	Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C)(Abscisic acid- insensitive 2)	2e-6	At1g72770	HAB1 (HOMOLOGY TO ABI1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os02g0766700	AK072062.1	-	Abscisic acid responsive elements-binding factor(ABA-responsive element binding protein 2) (AREB2)	6e-5	At2g36270	ABI5 (ABA INSENSITIVE 5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	25.6	Os04g0623300	CB618007	-	Flavin-containing amine oxidase family protein	2e-18	At2g43020	ATPAO2 (Polyamine oxidase 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	Os06g0712300	AK058857.1	-	Phospholipid/glycerol acyltransferase familyprotein	6e-30	At2g45670	calcineurin B subunit-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	98.4	GSM278852	KT95-418-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
12.5	98.3	GSM278855	KT95-418-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.9	98.0	GSM278854	KT95-418-non-infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.4	97.9	GSM278849	WuYun3-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
8.5	97.7	GSM278850	KT95-418-RSV infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
8.3	97.7	GSM278846	WuYun3-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
8.2	97.7	GSM278853	KT95-418-non-infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
8.0	97.6	GSM278848	WuYun3-non-infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.9	97.6	GSM278851	KT95-418-RSV infected,biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.8	97.3	GSM278845	WuYun3-RSV infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	1e-12	75	Os03g0156600	AK105367.1	-	Heavy metal transport/detoxification proteindomain containing protein	1e-13	At5g66110	metal ion binding	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	2e-5	52	Os06g0542300	9634.m03314	-	Heavy metal transport/detoxification proteindomain containing protein	3e-2	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	1e-9	65	Os09g0364800	AK068537.1	-	Heavy metal transport/detoxification proteindomain containing protein	2e-2	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	4e-6	54	Os02g0683800	AK072580.1	-	Conserved hypothetical protein	5e+0	At5g66110	metal ion binding	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-7	57	Os03g0152000	AK102357.1	-	-	4e-2	At5g24580	copper-binding family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	5e-10	65	Arabidopsis thaliana	At4g38580	830015	ATFP6 (FARNESYLATED PROTEIN 6)	putative farnesylated protein (At4g38580) mRNA, complete	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	4e-8	59	Glycine max	Gma.1397.1.S1_a_at	CD408242	-	-	6e-24	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	C.G.	S.X.	Please select
0.25	3e-31	135	Hordeum vulgare	Contig11751_at	Contig11751	-	-	1e-4	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	C.G.	S.X.	Please select
0.10	6e-1	36	Populus trichocarpa	PtpAffx.3173.9.S1_at	CV262060	hypothetical protein	-	2e-2	At4g35060	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	2e-117	422	Triticum aestivum	Ta.4941.1.S1_at	BT009077.1	-	-	5e-4	At5g66110	metal ion binding	C.G.	S.X.	Please select
0.06	9e-6	50	Vitis vinifera	1608337_at	BQ792532	hypothetical protein LOC100260571	-	2e-15	At5g66110	metal ion binding	C.G.	S.X.	Please select
0.36	7e-60	230	Zea mays	Zm.10202.1.A1_at	AY112463.1	farnesylated protein 1	-	3e-8	At5g66110	metal ion binding	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage