CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0235600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0235600 CR291556 - ATP synthase B chain (EC 3.6.3.14) (Subunit I) 2e-42 Atcg00130 - S.X. H.G.
0.83 95.8 Os01g0792400 AK062797.1 - Photosystem I assembly protein ycf4 2e-53 Atcg00520 - S.X. H.G.
0.80 94.6 Os01g0749400 AK067731.1 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 S.X. H.G.
0.73 91.1 Os06g0598500 AK058623.1 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 0 Atcg00490 - S.X. H.G.
0.67 87.2 Os10g0527100 BI795990 - Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV) 2e+0 At5g15850 COL1 (constans-like 1) S.X. H.G.
0.60 79.7 Os01g0338600 AK066580.1 - Conserved hypothetical protein 6e-29 At2g43945 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 96.8 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2 96.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.0 95.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.8 95.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.8 95.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.67 0 3021 Os10g0527100 BI795990 - Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV) 2e+0 At5g15850 COL1 (constans-like 1) C.G. S.X.
0.08 3e-6 54 Os12g0297500 AK072331.1 - Glycoside hydrolase, starch-binding domaincontaining protein 4e-17 At5g26570 ATGWD3 C.G. S.X.
0.02 2e+0 34 Os01g0578700 AK099956.1 - Hypothetical protein 2e+0 At5g63370 protein kinase family protein C.G. S.X.
0.01 6e-1 36 Os05g0583500 D43360 - PX-associated domain containing protein 4e+0 At4g00355 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 2e-42 173 Arabidopsis thaliana Atcg00130 - - ATPase F subunit. - - - C.G. S.X.
0.18 8e-46 184 Glycine max Gma.17682.1.S1_at BG839162 - - 0 Atcg00120 - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HW02F14u_at HW02F14u - - 3e+0 At4g19770 glycosyl hydrolase family 18 protein C.G. S.X.
0.60 1e-115 416 Populus trichocarpa PtpAffx.2270.2.A1_a_at CV256802 - - 2e-163 Atcg00130 - C.G. S.X.
0.57 1e-136 486 Triticum aestivum TaAffx.128565.9.S1_at CA660562 - - 3e-13 Atcg00130 - C.G. S.X.
0.08 1e-80 297 Vitis vinifera 1614676_s_at BQ793152 ATP synthase subunit a, chloroplastic - 0 Atcg00120 - C.G. S.X.
0.89 0 841 Zea mays ZmAffx.1433.1.S1_at 11990232-18 ATP synthase B chain - 7e-45 Atcg00130 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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