CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0218400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0218400 AK065174.1 - ERD3 protein 1e-3 At1g31850 dehydration-responsive protein, putative S.X. H.G.
0.43 55.4 Os09g0504000 AK068607.1 - Nucleotide sugar epimerase-like protein(UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6) 7e-11 At1g02000 GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2) S.X. H.G.
0.06 3.0 Os02g0498700 AK069572.1 - Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) 1e-77 At3g25140 QUA1 (QUASIMODO 1) S.X. H.G.
0.05 2.5 Os01g0883900 AK119636.1 - Putative methyltransferase DUF248 family protein 2e-12 At5g64030 dehydration-responsive protein-related S.X. H.G.
0.04 2.0 Os04g0501800 CA764882 - Protein of unknown function DUF1068 family protein 6e-3 At2g24290 unknown protein S.X. H.G.
0.01 0.5 Os01g0856500 AK103981.1 - AUX1-like protein 1e-46 At5g01240 amino acid permease, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.8 98.8 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
14.7 98.6 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
9.7 98.0 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.8 97.8 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
7.8 97.6 GSM429985 Rice mutant phoenix (pho) panicle rep 2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
7.3 97.5 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.8 97.3 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
6.7 97.3 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.1 97.1 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.5 96.8 GSM67054 FL478 control replicate 3 GSE3053 Rice salt expression
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-9 65 Os06g0128100 CA766672 - Putative methyltransferase DUF248 family protein 2e-8 At2g45750 dehydration-responsive family protein C.G. S.X.
0.05 1e-14 83 Os11g0186300 AK109545.1 - Putative methyltransferase DUF248 family protein 2e-9 At2g34300 dehydration-responsive protein-related C.G. S.X.
0.02 3e-9 65 Os06g0712800 AK121236.1 - Ankyrin-like protein 1e+0 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) C.G. S.X.
0.02 1e-8 63 Os04g0570800 AK099906.1 - Putative methyltransferase DUF248 family protein 1e-4 At4g00750 dehydration-responsive family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-3 46 Arabidopsis thaliana At1g31850 840075 dehydration-responsive protein, putative F:unknown;P:biological_process unknown;C:Golgi apparatus;PBOFA - - - C.G. S.X.
0.02 1e-4 50 Glycine max Gma.16291.1.S1_at AW350377 - - 9e-128 At3g23300 dehydration-responsive protein-related C.G. S.X.
0.22 5e-91 335 Hordeum vulgare Contig10142_at Contig10142 - - 1e-1 At1g12665 - C.G. S.X.
0.04 5e-1 38 Populus trichocarpa Ptp.5738.1.S1_at CV243569 hypothetical protein - 2e-3 At1g31850 dehydration-responsive protein, putative C.G. S.X.
0.36 3e-88 327 Triticum aestivum Ta.4387.1.S1_at CK212172 - - 1e-2 At1g31850 dehydration-responsive protein, putative C.G. S.X.
0.05 4e-1 36 Vitis vinifera 1611979_at CB979128 hypothetical protein LOC100251016 - 1e-31 At4g19120 ERD3 (early-responsive to dehydration 3) C.G. S.X.
0.07 3e-15 83 Zea mays Zm.2823.1.A1_at BI097694 ankyrin protein kinase-like - 2e+1 At5g40260 nodulin MtN3 family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage