Gene omics information

Query gene ID	Os04g0213400
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.2	Os04g0213400	9636.m01647	-	-	2e+0	At1g06930	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	Os04g0334540	9638.m01431	-	-	8e+0	At5g50800	nodulin MtN3 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	Os01g0136000	9629.m00355	-	16.9 kDa class I heat shock protein	1e-5	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os11g0230100	9639.m01184	-	-	2e-1	At4g05497	F-box family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os02g0322600	9630.m02084	-	-	4e-2	At4g35860	ATGB2 (GTP-BINDING 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os05g0433100	9633.m03333	-	Abscisic acid-activated protein kinase	3e-10	At1g10940	SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os09g0320000	9637.m01227	-	-	2e-1	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
82.9	100.0	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
41.0	99.9	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.5	99.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4	99.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4	99.4	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3	99.2	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7	99.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7	99.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6	99.1	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.0	98.9	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	7e-61	236	Os05g0113900	AK074018.1	-	Histone H2A	2e-9	At1g08880	H2AXA	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	9e-42	173	Os03g0279200	CA753594	-	Histone H2A	1e-7	At5g02560	HTA12	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	2e-52	208	Os05g0461400	AK067406.1	-	Histone H2A.2.1	6e-13	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	1e-19	99	Os12g0262550	9640.m01575	-	-	3e+0	At2g37250	ADK (ADENOSINE KINASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	1e+0	34	Os01g0244100	NM_183651.1	-	-	2e+0	At5g46530	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	1e+0	34	Os01g0922700	9629.m06891	-	Hypothetical protein	7e-2	At1g27760	interferon-related developmental regulator family protein / IFRD protein family	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	7e-2	38	Os04g0618600	AK106689.1	-	Long hypocotyl in far-red 1 (bHLH-like proteinHFR1) (Reduced phytochrome signaling) (Basichelix-loop-helix FBI1 protein) (Basic helix-loop-helixprotein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity tofar-red light)	6e-5	At1g09530	PIF3 (PHYTOCHROME INTERACTING FACTOR 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-1	36	Os02g0101700	AK072570.1	-	HECT ubiquitin-protein ligase 3 (KAKTUS protein)	2e-14	At4g38600	KAK (KAKTUS)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-1	36	Os03g0143100	9631.m00411	-	-	7e-2	At5g53810	O-methyltransferase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-1	36	Os10g0577100	9638.m03906	-	-	1e+0	At4g09830	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At1g06930	837204	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	32	Glycine max	HgAffx.9575.1.S1_at	CB378926	-	-	5e+0	At3g14840	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.07	5e+0	30	Hordeum vulgare	HY07L14u_at	HY07L14u	-	-	7e+0	At5g64400	-	C.G.	S.X.	Please select
0.04	8e-1	34	Populus trichocarpa	PtpAffx.83489.1.S1_at	CV225377	hypothetical protein	-	1e+0	At3g06035	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+1	30	Triticum aestivum	TaAffx.57166.1.S1_at	CA635243	-	-	1e-1	At4g11020	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	30	Vitis vinifera	1615160_at	CF517266	-	-	7e-2	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select
0.06	1e+0	32	Zea mays	Zm.7727.5.A1_at	AI782981	-	-	1e-25	At4g02890	UBQ14	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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