Gene omics information

Query gene ID	Os04g0212200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	71.3	Os04g0212200	CB661419	-	Response regulator receiver domain containingprotein	2e-1	At4g19490	protein binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	Os02g0749500	AK119455.1	-	Exocyst complex component Sec6 family protein	2e-49	At1g71820	SEC6	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os01g0121800	AK105432.1	-	Hypothetical protein	1e-2	At5g39990	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os09g0266400	AK065862.1	-	Esterase/lipase/thioesterase domain containingprotein	1e-29	At3g27325	hydrolase, acting on ester bonds	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	Os01g0276800	AK062536.1	-	Pectin lyase-like family protein	2e-5	At5g56360	calmodulin-binding protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.34	40.0	Os01g0907300	AK103626.1	-	Conserved hypothetical protein	1e-3	At3g07180	GPI transamidase component PIG-S-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	97.5	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5	97.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8	97.0	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8	97.0	GSM275408	Bala root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.3	96.7	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.1	96.6	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.8	96.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8	96.5	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.7	96.4	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.6	96.3	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Os01g0242500	NM_188723.1	-	D-tyrosyl-tRNA(Tyr) deacylase family protein	9e-16	At4g18460	D-Tyr-tRNA(Tyr) deacylase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-1	36	Os03g0113700	AK103835.1	-	Heat shock 70 kDa protein, mitochondrial precursor	2e-61	At4g37910	mtHsc70-1 (mitochondrial heat shock protein 70-1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-1	36	Os11g0485200	AK068468.1	-	ATPase, E1-E2 type family protein	2e-3	At1g80660	AHA9	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os03g0355900	CB624404	-	Conserved hypothetical protein	4e-14	At4g31530	binding / catalytic	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os04g0377400	9632.m02928	-	-	4e-1	At2g39130	amino acid transporter family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os10g0522200	NM_197410.1	-	-	4e-1	At1g61688	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e+0	34	Os07g0592200	AK099740.1	-	Peptidase A1, pepsin family protein	2e-11	At5g43100	aspartyl protease family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e+0	34	Os02g0301800	AK067818.1	-	Disease resistance protein family protein	5e-1	At5g20310	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e+0	34	Os08g0484200	9636.m03794	-	Zn-finger, RING domain containing protein	7e-1	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	38	Arabidopsis thaliana	At4g19490	827690	protein binding	Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	3e-10	67	Glycine max	Gma.3089.2.S1_at	BM893430	-	-	4e-35	At4g19490	protein binding	C.G.	S.X.	Please select
0.47	0	841	Hordeum vulgare	Contig13564_at	Contig13564	-	-	8e-4	At4g19490	protein binding	C.G.	S.X.	Please select
0.02	6e-2	40	Populus trichocarpa	PtpAffx.101791.1.A1_at	CV251439	SET domain protein	-	2e-17	At4g02020	SWN (SWINGER)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	0	866	Triticum aestivum	Ta.19072.1.S1_at	CD892139	-	-	2e-4	At4g19490	protein binding	C.G.	S.X.	Please select
0.02	1e-2	40	Vitis vinifera	1612783_at	CF414320	-	-	2e+1	At5g20440	protein binding	C.G.	S.X.	Please select
0.05	5e+0	32	Zea mays	ZmAffx.1208.1.A1_at	BE186278	-	-	8e-1	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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