CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0196300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os04g0196300 AK073111.1 - Hypothetical protein 9e-2 At5g01900 WRKY62 S.X. H.G.
0.53 71.3 Os03g0425100 AK070206.1 - Hypothetical protein 2e+0 At3g15790 MBD11 S.X. H.G.
0.53 71.3 Os12g0179700 AK120612.1 - Hypothetical protein 1e+0 At2g01464 S.X. H.G.
0.40 51.1 Os11g0579600 AK106009.1 - Conserved hypothetical protein 2e-1 At1g76070 unknown protein S.X. H.G.
0.40 51.1 Os05g0543800 AK102850.1 - Hypothetical protein 4e+0 Atmg00720 - S.X. H.G.
0.39 48.3 Os01g0933400 AK070303.1 - Hypothetical protein 7e-1 At1g21600 PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) S.X. H.G.
0.39 48.3 Os11g0689800 AK119600.1 - Conserved hypothetical protein 9e-1 At5g05420 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative S.X. H.G.
0.25 24.1 Os03g0744200 AK063816.1 - Hypothetical protein 1e-1 At2g41840 40S ribosomal protein S2 (RPS2C) S.X. H.G.
0.24 22.4 Os08g0535100 AK065449.1 - Conserved hypothetical protein 3e-1 At1g73000 - S.X. H.G.
0.23 21.2 Os01g0324400 AK102490.1 - Hypothetical protein 9e-1 At2g44304 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.9 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
8.7 97.8 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-11 71 Os03g0658400 9631.m04412 - - 6e+0 At2g16019 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-2 38 Arabidopsis thaliana At5g01900 831826 WRKY62 member of WRKY Transcription Factor; Group III - - - C.G. S.X.
0.03 5e-1 36 Glycine max HgAffx.8205.1.S1_at CB380296 - - 1e+0 At3g14960 galactosyltransferase family protein C.G. S.X.
0.05 3e+0 32 Hordeum vulgare HVSMEn0024G17f_x_at HVSMEn0024G17f - - 3e+0 At3g07470 unknown protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.133437.1.A1_at CV275893 hypothetical protein - 9e-36 At3g14600 60S ribosomal protein L18A (RPL18aC) C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.79864.1.S1_at CA707155 - - 1e+1 At5g27670 HTA7 (HISTONE H2A 7) C.G. S.X.
0.03 7e-3 40 Vitis vinifera 1616792_at CD801227 hypothetical protein LOC100257755 - 4e+0 At5g02240 binding / catalytic/ coenzyme binding C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.174.1.A1_at AI668269 SAUR12 - auxin-responsive SAUR family member - 3e+0 At5g59060 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage