CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0183500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.1 Os04g0183500 9632.m00919 - Amidase family protein 3e+0 At2g10940 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.11 6.5 Os04g0156200 9632.m00640 - Ribulose-phosphate binding barrel domaincontaining protein 7e-2 At1g64330 myosin heavy chain-related S.X. H.G.
0.09 4.9 Os08g0546900 AU197913 - NC domain containing protein 4e+0 At5g59490 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.07 3.7 Os12g0152100 AK070021.1 - Alpha/beta hydrolase fold domain containingprotein 6e-4 At3g48410 hydrolase, alpha/beta fold family protein S.X. H.G.
0.05 2.5 Os01g0636500 CR278327 - Glycoside hydrolase, family 28 protein 6e-4 At1g10640 polygalacturonase S.X. H.G.
0.04 2.0 Os02g0256100 AK059595.1 - Glycoside hydrolase, family 28 protein 1e-24 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.4 99.4 GSM67061 IR29 salt stressed replicate 2 GSE3053 Rice salt expression
23.5 99.4 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
18.4 99.0 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
15.9 98.7 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
14.0 98.5 GSM99865 TCHW P8_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
13.6 98.5 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
13.0 98.4 GSM99868 TCHW P11_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
11.4 98.2 GSM99869 TCHW P12_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
11.4 98.2 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
8.6 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.68 3e-165 583 Os04g0184100 AK064021.1 - Amidase family protein 3e-10 At4g34880 amidase family protein C.G. S.X.
0.45 2e-126 454 Os04g0182900 9632.m00913 - Amidase family protein 8e-1 At4g24240 WRKY7 C.G. S.X.
0.33 3e-51 204 Os04g0185000 9632.m00937 - Hypothetical protein 1e+0 At3g59800 unknown protein C.G. S.X.
0.22 3e-57 224 Os04g0183300 AK100045.1 - Amidase family protein 1e+0 At4g34880 amidase family protein C.G. S.X.
0.09 7e-18 93 Os06g0271450 9634.m01608 - - 8e-1 At3g48000 ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At2g10940 815558 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:chloroplast thylakoid membrane, apoplast, chloroplast, membrane;MBPOFVA - - - C.G. S.X.
0.02 3e-1 38 Glycine max Gma.10729.2.S1_at CA801752 - - 1e+0 At5g63530 ATFP3 C.G. S.X.
0.20 4e-7 56 Hordeum vulgare Contig11736_at Contig11736 - - 2e+0 At1g03180 unknown protein C.G. S.X.
0.05 3e-7 57 Populus trichocarpa PtpAffx.204288.1.S1_at pmrna8437 hypothetical protein - 1e-2 At4g34880 amidase family protein C.G. S.X.
0.11 1e-5 52 Triticum aestivum Ta.13949.1.A1_at BQ752616 - - 6e+0 At4g16195 self-incompatibility protein-related C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1616155_at CA817917 - - 4e+0 At5g53205 unknown protein C.G. S.X.
0.24 2e-12 73 Zea mays Zm.5302.1.A1_at BG836267 - - 6e-1 At5g42630 ATS (ABERRANT TESTA SHAPE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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