CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0175600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.36 44.0 Os04g0175600 AK072016.1 - Caffeic acid O-methyltransferase (EC 2.1.1.6) 7e-1 At3g24020 disease resistance-responsive family protein S.X. H.G.
0.40 51.1 Os12g0550600 AK059672.1 - Conserved hypothetical protein 1e+0 At1g63600 protein kinase-related S.X. H.G.
0.38 46.9 Os04g0294850 AK120383.1 - - 1e+0 At4g33585 unknown protein S.X. H.G.
0.33 38.8 Os06g0614400 AK120383.1 - Conserved hypothetical protein 1e+0 At4g33585 unknown protein S.X. H.G.
0.11 6.5 Os01g0543600 AK120213.1 - E-class P450, group I family protein 1e+0 At4g31500 CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1) S.X. H.G.
0.04 2.0 Os12g0458900 AK062722.1 - Hypothetical protein 1e+0 At5g48860 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.5 99.8 GSM304677 Unstable mutant line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
29.8 99.7 GSM304671 Unstable mutant line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
23.5 99.4 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
22.1 99.3 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
21.9 99.3 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
17.6 98.9 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
15.9 98.7 GSM304395 Control for the stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
15.4 98.7 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
13.9 98.5 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
13.3 98.4 GSM304394 Stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 3e-109 397 Os04g0175900 AK061551.1 - 0-methyltransferase (EC 2.1.1.6) (Fragment) 1e-2 At1g33030 O-methyltransferase family 2 protein C.G. S.X.
0.54 4e-155 549 Os04g0104900 AK069960.1 - Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)(S-adenosysl-L- methionine:caffeic acid3-O-methyltransferase) (COMT) (CAOMT) 2e-1 At4g35150 O-methyltransferase family 2 protein C.G. S.X.
0.23 1e-22 109 Os12g0202700 9640.m00951 - O-methyltransferase, family 2 protein 4e-1 At1g18800 NRP2 (NAP1-RELATED PROTEIN 2) C.G. S.X.
0.12 3e-17 91 Os12g0240900 9640.m01336 - Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)(S-adenosysl-L- methionine:caffeic acid3-O-methyltransferase) (COMT) (CAOMT) 6e-2 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.09 4e-7 57 Os12g0199500 9640.m00915 - - 3e+0 At3g47920 unknown protein C.G. S.X.
0.07 6e-6 54 Os12g0202800 9640.m00954 - 0-methyltransferase (EC 2.1.1.6) (Fragment) 7e-1 At4g35150 O-methyltransferase family 2 protein C.G. S.X.
0.02 9e-5 50 Os04g0612600 AB042115.1 - Coatomer-like protein, epsilon subunit 8e-25 At2g34840 coatomer protein epsilon subunit family protein / COPE family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Arabidopsis thaliana At3g24020 821987 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB - - - C.G. S.X.
0.02 2e-1 38 Glycine max GmaAffx.84530.1.S1_at BU090645 - - 3e+0 At5g02930 F-box family protein C.G. S.X.
0.12 2e-5 50 Hordeum vulgare Contig18798_at Contig18798 - - 5e+0 At5g48900 pectate lyase family protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa Ptp.4045.2.S1_at CN193425 hypothetical protein - 1e+1 At5g59440 ZEU1 (ZEUS1) C.G. S.X.
0.30 2e-26 121 Triticum aestivum Ta.5388.1.S1_a_at CD864742 - - 3e+0 At1g32760 glutaredoxin family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1621702_at CB003839 - - 9e-8 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) C.G. S.X.
0.02 2e-2 40 Zea mays Zm.17949.1.A1_at CF627845 - - 2e-2 At5g13170 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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