Gene omics information

Query gene ID Os04g0172400
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4660.9Os04g0172400AK064755.1-Transferase family protein2e-1At2g38480integral membrane protein, putativeS.X.H.G.
0.4458.1Os08g0372900AK102881.1-Annexin A7 (Annexin VII) (Synexin). Splice isoformShort3e+0At2g25250unknown proteinS.X.H.G.
0.3338.8Os03g0700200AK119711.1-Somatomedin B domain containing protein4e+0At1g20340DRT112S.X.H.G.
0.3032.7Os10g0116800AK110804.1-Purple acid phosphatase6e-4At2g01890PAP8 (PURPLE ACID PHOSPHATASE 8)S.X.H.G.
0.1712.6Os06g0548200AK105176.1-FAD linked oxidase, N-terminal domain containingprotein4e-3At1g26420FAD-binding domain-containing proteinS.X.H.G.
0.031.4Os06g0534800AK120650.1-Ankyrin repeat containing protein3e+0At5g23100unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
68.499.9GSM359922Pokkali root, salt-treated, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
29.799.7GSM359923Pokkali root, salt-treated, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
26.399.5GSM359920Pokkali root, control, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
23.299.3GSM174886F FR13 4 dpi rep 1 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
22.899.3GSM359924Pokkali root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.798.8GSM359921Pokkali root, control, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.498.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in Musa
16.298.8GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in Musa
12.198.3GSM100443Rice Bala 0ppm Arsenate (Control) Rep1GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
11.498.2GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.262e-24115Os04g01944009632.m01055-Transferase family protein1e+1At3g01513unknown proteinC.G.S.X.
0.201e-1999Os04g01755009632.m00828-Transferase family protein3e+0At2g27180unknown proteinC.G.S.X.
0.171e-1689Os01g0271901NM_188063.1--4e+0At3g25905CLE27 (CLAVATA3/ESR-RELATED 27)C.G.S.X.
0.092e-861Os10g0108700AK060060.1-Transferase family protein1e+1At5g50460protein transport protein SEC61 gamma subunit, putativeC.G.S.X.
0.091e-759Os10g0122500NM_194664.1-Transferase family protein6e-1At1g71120GLIP6C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-138Arabidopsis thalianaAt2g38480818430integral membrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;P---C.G.S.X.
0.023e-138Glycine maxPsAffx.C25000083_s_atPsAffx.C25000083--6e-2At2g39795mitochondrial glycoprotein family protein / MAM33 family proteinC.G.S.X.
0.054e-136Hordeum vulgareContig5885_atContig5885--3e+0At4g02465unknown proteinC.G.S.X.
0.021e+036Populus trichocarpaPtpAffx.119068.1.S1_s_atBU868066serine hydroxymethyltransferase 8-3e-26At4g32520SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3)C.G.S.X.
0.052e-448Triticum aestivumTaAffx.123296.1.S1_atCA664390Acyl transferase 5-like-1e+1At1g75080BZR1 (BRASSINAZOLE-RESISTANT 1)C.G.S.X.
0.022e-136Vitis vinifera1613538_atCB969057hypothetical protein LOC100243093-6e-6At4g00400GPAT8 (glycerol-3-phosphate acyltransferase 8)C.G.S.X.
0.022e-240Zea maysZm.18284.1.A1_atBG873939hypothetical protein LOC100191290-5e+0At5g11830-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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