CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0165700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 Os04g0165700 AK102512.1 - Cysteine synthase (EC 2.5.1.47) (O-acetylserinesulfhydrylase) (O- acetylserine (Thiol)-lyase) (CSase)(OAS-TL) 1e-21 At3g61440 CYSC1 (CYSTEINE SYNTHASE C1) S.X. H.G.
0.53 71.3 Os02g0634500 AK065162.1 - ATP-dependent Clp protease, proteolytic subunitClpP (EC 3.4.21.92) 2e-3 At5g23140 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) S.X. H.G.
0.52 69.6 Os08g0484500 AK070359.1 - Phospho-2-dehydro-3-deoxyheptonate aldolase 1,chloroplast precursor (EC 2.5.1.54)(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHPsynthetase 1) (3-deoxy-D-arabino-heptulosonate7-phosphate synthase 1) 4e-37 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative S.X. H.G.
0.52 69.6 Os06g0646600 CB659494 - KNOX family class 2 homeodomain protein 3e-14 At4g32040 KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5) S.X. H.G.
0.51 68.7 Os03g0425200 AK101293.1 - Inosine/uridine-preferring nucleoside hydrolasedomain containing protein 5e-14 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) S.X. H.G.
0.43 55.4 Os06g0133800 AK105053.1 - The start codon is not identified. 1e-49 At2g45290 transketolase, putative S.X. H.G.
0.40 51.1 Os01g0971000 CR288784 - - 1e+0 At3g61860 RSP31 S.X. H.G.
0.40 51.1 Os12g0276100 AK062912.1 - Hypothetical protein 2e+0 At3g17830 DNAJ heat shock family protein S.X. H.G.
0.39 48.3 Os02g0761400 AK060417.1 - Hypothetical protein 2e-24 At3g19170 ATPREP1 (PRESEQUENCE PROTEASE 1) S.X. H.G.
0.39 48.3 Os01g0138900 AK072417.1 - Mandelate racemase/muconate lactonizing enzymefamily protein 5e-19 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.8 98.1 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
10.5 98.1 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
5.5 96.8 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.4 96.8 GSM174884 E mock 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.2 96.7 GSM421678 XOC, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.7 96.4 GSM421717 MOCK, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.3 96.1 GSM421675 XOC, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.2 96.0 GSM421694 XOO, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.2 96.0 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.2 96.0 GSM421718 MOCK, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-10 69 Os01g0978100 D10957.1 - Cysteine synthase, mitochondrial precursor (EC2.5.1.47) (O- acetylserine sulfhydrylase) (O-acetylserine(Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C) 5e-25 At3g59760 OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) C.G. S.X.
0.06 2e-2 42 Os03g0747800 CR279243 - Cysteine synthase (EC 2.5.1.47) (O-acetylserinesulfhydrylase) (O- acetylserine (Thiol)-lyase) (CSase)(OAS-TL) 9e-22 At4g14880 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) C.G. S.X.
0.02 2e-2 42 Os05g0198200 9633.m00959 - Glutaredoxin domain containing protein 1e-1 At4g33040 glutaredoxin family protein C.G. S.X.
0.01 6e-3 44 Os06g0571000 9634.m03565 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At4g19270 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-21 105 Arabidopsis thaliana At3g61440 825317 CYSC1 (CYSTEINE SYNTHASE C1) Encodes a cysteine synthase isomer CysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway. - - - C.G. S.X.
0.19 1e-9 65 Glycine max GmaAffx.91381.1.S1_at CF806872 OAS-TL3 cysteine synthase - 9e-68 At3g61440 CYSC1 (CYSTEINE SYNTHASE C1) C.G. S.X.
0.25 4e-50 198 Hordeum vulgare HW07D08u_s_at HW07D08u - - 2e-5 At3g61440 CYSC1 (CYSTEINE SYNTHASE C1) C.G. S.X.
0.23 9e-23 109 Populus trichocarpa PtpAffx.4365.4.A1_at CV277897 hypothetical protein - 6e-57 At3g61440 CYSC1 (CYSTEINE SYNTHASE C1) C.G. S.X.
0.43 6e-162 571 Triticum aestivum Ta.30623.1.S1_at BJ285357 - - 4e+0 At3g61440 CYSC1 (CYSTEINE SYNTHASE C1) C.G. S.X.
0.10 4e-15 81 Vitis vinifera 1608615_at BQ799732 hypothetical protein LOC100255091 - 2e-33 At3g61440 CYSC1 (CYSTEINE SYNTHASE C1) C.G. S.X.
0.49 5e-176 617 Zea mays Zm.807.1.A1_at BG836005 hypothetical protein LOC100216722 - 5e-2 At4g14880 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006535 The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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