CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0134700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0134700 9632.m00384 - - 1e+1 At5g58500 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) S.X. H.G.
0.67 87.2 Os08g0426200 9636.m03305 - - 2e+0 At3g17580 unknown protein S.X. H.G.
0.63 82.7 Os04g0366500 9632.m02816 - - 1e+1 At3g51060 STY1 (STYLISH 1) S.X. H.G.
0.61 81.2 Os11g0617400 9639.m03684 - - 5e-2 At5g07560 GRP20 (GLYCINE-RICH PROTEIN 20) S.X. H.G.
0.59 78.0 Os01g0528900 9629.m03236 - - 4e+0 At4g31150 endonuclease V family protein S.X. H.G.
0.38 46.9 Os04g0547500 9632.m04453 - - 5e-4 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
200.2 100.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
62.5 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
57.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.7 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-12 73 Os01g0496300 9629.m02894 - - 9e+0 At3g43430 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 2e-18 93 Os02g0165900 AK069351.1 - Conserved hypothetical protein 6e-1 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+1 30 Arabidopsis thaliana At5g58500 835963 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM - - - C.G. S.X.
0.04 1e+0 34 Glycine max PsAffx.CL140Contig1_s_at PsAffx.CL140Contig1 - - 2e-1 At3g61370 unknown protein C.G. S.X.
0.05 1e+0 32 Hordeum vulgare Contig20696_at Contig20696 - - 4e+0 At2g42190 unknown protein C.G. S.X.
0.06 4e+0 32 Populus trichocarpa PtpAffx.216510.1.S1_at pmrna31334 hypothetical protein - 5e+0 At1g78410 VQ motif-containing protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.77896.1.S1_at CA741073 - - 3e+0 At2g21195 unknown protein C.G. S.X.
0.03 1e+1 28 Vitis vinifera 1618179_at CF568870 - - 4e-3 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.04 5e+0 30 Zea mays ZmAffx.910.1.S1_at AI770949 growth-regulating factor 13-like - 3e+0 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006278 The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.
L GO:0006310 Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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