CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0127300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 91.9 Os04g0127300 AK062269.1 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 3e-1 At4g10520 subtilase family protein S.X. H.G.
0.36 44.0 Os11g0661900 AK064062.1 - Hypothetical protein 8e-1 At5g57640 - S.X. H.G.
0.36 44.0 Os08g0112900 AK105876.1 - Lipolytic enzyme, G-D-S-L family protein 1e-2 At1g71691 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.09 4.9 Os03g0239000 AK061284.1 - Glycoside hydrolase, family 16 domain containingprotein 2e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) S.X. H.G.
0.04 2.0 Os01g0954900 AK110957.1 - Peptidase A1, pepsin family protein 3e-3 At5g07030 aspartic-type endopeptidase S.X. H.G.
0.04 2.0 Os07g0658600 CK738634 - Radc1 1e-8 At5g07030 aspartic-type endopeptidase S.X. H.G.
0.04 2.0 Os01g0182700 AY341853.1 - WRKY transcription factor 34 1e-2 At2g44745 WRKY family transcription factor S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.4 99.8 GSM99875 TCHW P18_agami salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
29.1 99.7 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
28.5 99.6 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
26.8 99.6 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
25.6 99.5 GSM99873 TCHW P16_agami salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
16.4 98.8 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
15.6 98.7 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.2 98.3 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
10.3 98.1 GSM99869 TCHW P12_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
10.1 98.0 GSM99865 TCHW P8_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 6e-155 549 Os04g0127200 AK100128.1 - Subtilase 5e-3 At4g10510 subtilase family protein C.G. S.X.
0.03 8e-3 44 Os04g0121100 9632.m00213 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 1e+0 At4g15040 identical protein binding / serine-type endopeptidase C.G. S.X.
0.01 3e-5 52 Os09g0530800 9637.m03036 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 7e-2 At1g32980 subtilisin-like serine protease-related C.G. S.X.
0.01 1e-4 50 Os02g0271600 9630.m01603 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 4e+0 At4g10550 subtilase family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 38 Arabidopsis thaliana At4g10520 826644 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM - - - C.G. S.X.
0.05 6e-3 44 Glycine max GmaAffx.68175.1.S1_at BG650945 - - 1e-4 At5g59190 subtilase family protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig8308_at Contig8308 - - 3e-1 At1g66210 subtilase family protein C.G. S.X.
0.03 1e-3 46 Populus trichocarpa PtpAffx.224891.1.S1_at pmrna43802 hypothetical protein - 3e-4 At5g59810 SBT5.4 C.G. S.X.
0.02 4e+0 34 Triticum aestivum Ta.28847.1.S1_at CA740446 - - 8e-7 At4g10540 subtilase family protein C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1619270_at CB342792 - - 1e+0 At1g15190 - C.G. S.X.
0.01 2e+0 34 Zea mays Zm.11781.1.A1_at BM380704 - - 1e+0 At4g40090 AGP3 (arabinogalactan-protein 3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage