CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0116800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0116800 AK119922.1 - Naringenin-chalcone synthase family protein 5e-2 At5g24313 unknown protein S.X. H.G.
0.01 0.5 Os01g0378100 NM_193889.1 - Peroxidase precursor (EC 1.11.1.7) 1e-2 At5g15180 peroxidase, putative S.X. H.G.
0.00 0.1 Os08g0403300 AU096789 - Heavy metal transport/detoxification proteindomain containing protein 1e-2 At5g17450 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related S.X. H.G.
0.00 0.1 Os10g0349900 AK062848.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 5e-3 At1g12090 ELP (EXTENSIN-LIKE PROTEIN) S.X. H.G.
0.00 0.1 Os08g0172300 AK111274.1 - HAT dimerisation domain containing protein 2e+0 At3g04150 germin-like protein, putative S.X. H.G.
0.00 0.1 Os07g0222200 AK107502.1 - Protein of unknown function DUF594 family protein 4e-4 At2g39830 DAR2 (DA1-RELATED PROTEIN 2) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.3 99.9 GSM281583 Rice Zhonghua11, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
45.5 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
43.6 99.9 GSM281585 Rice Zhonghua11, biological rep3 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
26.6 99.5 GSM281584 Rice Zhonghua11, biological rep2 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
18.8 99.0 GSM281587 Rice mutant dst, biological rep2 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
13.4 98.5 GSM254092 Rice overexpressed OsSKIPa, biological repeat 2 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
12.6 98.4 GSM281586 Rice mutant dst, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
12.2 98.3 GSM281588 Rice mutant dst, biological rep3 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
12.0 98.3 GSM254097 Rice Control 2 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
11.2 98.2 GSM254096 Rice Control 1 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 8e-55 216 Os01g0529800 AK101002.1 - The start codon is not identified. 3e-4 At1g25450 KCS5 (3-KETOACYL-COA SYNTHASE 5) C.G. S.X.
0.17 7e-9 63 Os02g0731900 9630.m04890 - Naringenin-chalcone synthase family protein 1e-2 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
0.16 1e-13 79 Os06g0263400 9634.m01526 - Naringenin-chalcone synthase family protein 1e-2 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
0.11 3e-14 81 Os03g0220100 AK104714.1 - Very-long-chain fatty acid condensing enzyme CUT1(Very-long-chain fatty acid condensing enzyme (CUT1)56079-54227) 1e-12 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
0.10 1e-10 69 Os05g0574600 AK070754.1 - Fatty acid elongase 1-like protein 3e-13 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.07 1e-4 50 Os11g0591200 AK120567.1 - Beta-ketoacyl-CoA-synthase 1e-6 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.05 7e-6 54 Os03g0162800 AK064127.1 - Beta-ketoacyl-CoA-synthase 3e-3 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 40 Arabidopsis thaliana At5g24313 832499 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.03 1e-6 56 Glycine max Gma.7832.1.S1_s_at CD392810 - - 1e-37 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
0.18 2e-12 73 Hordeum vulgare Contig18311_at Contig18311 very long chain fatty acid condensing enzyme CUT1;1-like - 8e+0 At5g18748 unknown protein C.G. S.X.
0.02 7e-2 40 Populus trichocarpa PtpAffx.214091.1.S1_at pmrna27435 hypothetical protein - 1e-3 At1g23720 proline-rich extensin-like family protein C.G. S.X.
0.20 1e-15 85 Triticum aestivum Ta.9767.1.A1_at BJ230562 - - 4e+0 At1g22010 unknown protein C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1612105_at CF415846 hypothetical protein LOC100263066 - 4e-19 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
0.34 8e-33 141 Zea mays Zm.13586.1.S1_at AY107833.1 3-ketoacyl-CoA synthase - 6e-1 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage