CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0116200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.68 87.5 Os04g0116200 AK064677.1 - Conserved hypothetical protein 6e-1 At1g44830 AP2 domain-containing transcription factor TINY, putative S.X. H.G.
0.69 87.9 Os02g0704800 BM420590 - Ornithine carbamoyltransferase OOCT1 (EC 2.1.3.3) 2e+0 At1g52680 late embryogenesis abundant protein-related / LEA protein-related S.X. H.G.
0.64 83.4 Os06g0707700 AK100720.1 - Disease resistance protein family protein 1e+0 At4g37220 stress-responsive protein, putative S.X. H.G.
0.59 78.0 Os07g0610400 9635.m04199 - - 6e+0 At4g25890 60S acidic ribosomal protein P3 (RPP3A) S.X. H.G.
0.53 71.3 Os02g0282500 9630.m01709 - NBS-LRR protein (Fragment) 3e-1 At1g32990 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) S.X. H.G.
0.52 69.6 Os12g0129000 9640.m00264 - Eukaryotic protein of unknown function DUF872family protein 3e-1 At5g65350 histone H3 S.X. H.G.
0.49 64.4 Os12g0199100 AK065572.1 - Disease resistance protein family protein 2e+0 At5g49590 unknown protein S.X. H.G.
0.48 63.7 Os04g0380200 AK104769.1 - Conserved hypothetical protein 1e-1 At3g27210 unknown protein S.X. H.G.
0.47 62.3 Os08g0129400 9636.m00269 - - 4e+0 At1g22520 unknown protein S.X. H.G.
0.41 52.4 Os09g0447300 CB675967 - Cytochrome P450 family protein 2e+0 At3g52060 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
108.9 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.9 99.6 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
18.0 98.9 GSM99875 TCHW P18_agami salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
17.3 98.9 GSM99880 TCHW P22_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
15.4 98.7 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
14.6 98.6 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
13.7 98.5 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
13.1 98.4 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
12.0 98.3 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
11.0 98.2 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 4e-102 373 Os04g0116900 9632.m00170 - Conserved hypothetical protein 2e-2 At5g23100 unknown protein C.G. S.X.
0.04 1e-6 56 Os03g0339700 AK073084.1 - Plant protein of unknown function DUF827 familyprotein 1e-6 At3g56270 unknown protein C.G. S.X.
0.04 7e-5 50 Os12g0182100 9640.m00748 - - 3e-2 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) C.G. S.X.
0.03 3e-4 48 Os02g0307900 9630.m01962 - Hypothetical protein 2e-1 At3g63310 glutamate binding C.G. S.X.
0.02 3e-4 48 Os09g0322000 AK063975.1 - - 5e-12 At1g77210 sugar transporter, putative C.G. S.X.
0.02 3e-4 48 Os09g0322100 AK107018.1 - Conserved hypothetical protein 1e-3 At1g11260 STP1 (SUGAR TRANSPORTER 1) C.G. S.X.
0.02 3e-4 48 Os12g0204500 AK069867.1 - Uncharacterized plant-specific domain 01627containing protein 1e-2 At1g71690 unknown protein C.G. S.X.
0.02 1e-3 46 Os04g0692800 AK103159.1 - Conserved hypothetical protein 9e-1 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Arabidopsis thaliana At1g44830 841047 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. - - - C.G. S.X.
0.03 1e-2 42 Glycine max HgAffx.15894.1.S1_at CB280462 - - 4e-3 At5g44568 unknown protein C.G. S.X.
0.03 3e-1 36 Hordeum vulgare Contig12873_at Contig12873 - - 6e+0 At5g50430 UBC33 (ubiquitin-conjugating enzyme 33) C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.209933.1.S1_at pmrna19592 hypothetical protein - 7e-1 At5g57570 - C.G. S.X.
0.04 2e-1 38 Triticum aestivum TaAffx.51973.1.S1_at CA715465 - - 9e+0 At3g20557 unknown protein C.G. S.X.
0.03 7e-1 34 Vitis vinifera 1617484_s_at CB003457 - - 9e-1 At5g54630 zinc finger protein-related C.G. S.X.
0.03 6e-2 38 Zea mays Zm.7598.1.A1_at CF629653 - - 3e-3 At2g40510 40S ribosomal protein S26 (RPS26A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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