CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0114400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.96 99.7 Os04g0114400 9632.m00150 - - 5e+0 At1g33890 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative S.X. H.G.
0.78 93.4 Os07g0263300 XM_354251.1 - Hypothetical protein 2e+1 At5g65158 - S.X. H.G.
0.72 89.8 Os06g0354225 9634.m02436 - - 6e+0 At3g28917 MIF2 (MINI ZINC FINGER 2) S.X. H.G.
0.63 82.7 Os08g0277400 9636.m01763 - - 5e+0 At4g09030 AGP10 (ARABINOGALACTAN PROTEIN 10) S.X. H.G.
0.60 79.7 Os02g0286400 9630.m01747 - - 1e-1 At3g57670 NTT (NO TRANSMITTING TRACT) S.X. H.G.
0.58 77.0 Os07g0475300 9635.m02850 - - 7e+0 At5g64810 WRKY51 S.X. H.G.
0.57 77.0 Os09g0329332 9637.m01338 - - 2e+0 At1g26796 - S.X. H.G.
0.57 77.0 Os04g0143200 9632.m00488 - - 4e+0 At4g35100 PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) S.X. H.G.
0.55 73.7 Os11g0229600 AK111854.1 - Conserved hypothetical protein 2e+0 At4g33690 unknown protein S.X. H.G.
0.55 73.7 Os02g0796800 9630.m05501 - - 9e+0 At4g37200 HCF164 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
241.6 100.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
38.9 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.4 97.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.0 95.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.2 94.9 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
2.9 94.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 40 Os11g0668000 9639.m04135 - Disease resistance protein family protein 3e-1 At3g18715 IDL4 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4) C.G. S.X.
0.01 4e-2 42 Os08g0424700 AK100251.1 - Disease resistance protein family protein 1e-1 At5g09920 NRPB4 C.G. S.X.
0.01 1e-1 40 Os11g0682600 9639.m04244 - NBS-LRR class RGA 4e+0 At4g21865 unknown protein C.G. S.X.
0.01 6e-1 38 Os04g0523100 AK119597.1 - Homeodomain-like containing protein 4e+0 At5g50430 UBC33 (ubiquitin-conjugating enzyme 33) C.G. S.X.
0.01 6e-1 38 Os06g0538000 AK069949.1 - Chaperonin Cpn60/TCP-1 family protein 5e-83 At5g26360 chaperonin, putative C.G. S.X.
0.01 2e+0 36 Os02g0137500 CB636214 - HAC4 (Fragment) 2e-12 At1g79000 HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e+0 34 Arabidopsis thaliana At1g33890 840286 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative F:GTP binding;P:response to bacterium;C:cellular_component unknown;MPOBF - - - C.G. S.X.
0.01 7e-3 44 Glycine max GmaAffx.80245.1.S1_at BU927398 - - 9e-23 At4g04720 CPK21 C.G. S.X.
0.04 2e-4 48 Hordeum vulgare AF052397_at AF052397 - - 4e+0 At3g26740 CCL (CCR-LIKE) C.G. S.X.
0.01 4e-1 38 Populus trichocarpa PtpAffx.95606.1.A1_at CV240333 - - 3e+0 At5g52480 - C.G. S.X.
0.02 2e-2 42 Triticum aestivum TaAffx.143995.5.S1_at AY145086 - - 1e-1 At1g09430 ACLA-3 C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1610483_at CB971914 hypothetical protein LOC100242187 - 3e-1 At3g06870 proline-rich family protein C.G. S.X.
0.01 1e-1 38 Zea mays Zm.9854.2.A1_at CA452719 - - 4e-7 At5g63140 ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage