CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0107700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os04g0107700 AK110974.1 - Peptidase C1A, papain family protein 3e-3 At3g19400 cysteine proteinase, putative S.X. H.G.
0.60 79.7 Os04g0196200 9632.m01071 - O-methyltransferase, family 2 domain containingprotein 1e-1 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) S.X. H.G.
0.50 68.0 Os03g0404800 AK099537.1 - 3-beta hydroxysteroid dehydrogenase/isomerasefamily protein 4e-2 At1g47290 AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) S.X. H.G.
0.31 34.5 Os05g0365600 CB096565 - Hydroxyisourate hydrolase 2e+0 At3g60130 BGLU16 (BETA GLUCOSIDASE 16) S.X. H.G.
0.30 32.7 Os06g0192300 9634.m00877 - - 3e-1 At1g64340 unknown protein S.X. H.G.
0.09 4.9 Os11g0439600 AK069955.1 - Nod factor binding lectin-nucleotidephosphohydrolase 2e-1 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.3 99.9 GSM387556 Transgenic line 4, biological rep. 1 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
30.6 99.7 GSM116402 Seedling_BAP treated_rep2 GSE5167 Rice seedling hormone treatment
28.0 99.6 GSM116195 Seedling_Control_rep1 GSE5167 Rice seedling hormone treatment
26.4 99.5 GSM116401 Seedling_BAP treated_rep1 GSE5167 Rice seedling hormone treatment
19.3 99.0 GSM116399 Seedling_IAA treated_rep1 GSE5167 Rice seedling hormone treatment
19.0 99.0 GSM116398 Seedling_Control_rep2 GSE5167 Rice seedling hormone treatment
16.9 98.8 GSM116400 Seedling_IAA treated_rep2 GSE5167 Rice seedling hormone treatment
12.3 98.3 GSM159260 7-day-old Seedling, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
11.7 98.2 GSM159261 7-day-old Seedling, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
10.4 98.1 GSM302919 leaf_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-3 44 Os01g0347600 NM_183998.1 - Ervatamin B (EC 3.4.22.-) (ERV-B) 4e-2 At1g29090 peptidase C1A papain family protein C.G. S.X.
0.03 9e-2 40 Os12g0443200 9640.m02454 - - 5e-1 At1g20850 XCP2 (xylem cysteine peptidase 2) C.G. S.X.
0.02 6e-3 44 Os11g0255300 AK071495.1 - Peptidase C1A, papain family protein 3e-3 At4g23520 cysteine proteinase, putative C.G. S.X.
0.02 9e-2 40 Os04g0450000 AK108406.1 - FYVE/PHD zinc finger domain containing protein 8e+0 At3g13677 unknown protein C.G. S.X.
0.02 9e-2 40 Os06g0132500 9634.m00329 - Alpha/beta hydrolase family protein 1e-2 At1g64670 BDG1 (BODYGUARD1) C.G. S.X.
0.02 9e-2 40 Os09g0497500 AK072767.1 - Peptidase C1A, papain family protein 3e-3 At2g27420 cysteine proteinase, putative C.G. S.X.
0.01 9e-2 40 Os07g0540100 AK101714.1 - Receptor protein kinase 1e-3 At4g05200 protein kinase family protein C.G. S.X.
0.01 9e-2 40 Os08g0178200 AK070877.1 - Monosaccharide transporter 3 3e-7 At1g11260 STP1 (SUGAR TRANSPORTER 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-3 44 Arabidopsis thaliana At3g19400 821474 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF - - - C.G. S.X.
0.02 6e-5 50 Glycine max Gma.12150.1.S1_at AB092557.1 cysteine proteinase - 5e-11 At3g48340 cysteine-type endopeptidase/ cysteine-type peptidase C.G. S.X.
0.13 3e-23 109 Hordeum vulgare Contig2988_s_at Contig2988 - - 2e-1 At2g18670 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 6e-2 40 Populus trichocarpa PtpAffx.151041.1.S1_s_at AJ780822 hypothetical protein - 3e-1 At1g20850 XCP2 (xylem cysteine peptidase 2) C.G. S.X.
0.14 4e-21 103 Triticum aestivum Ta.1151.1.S1_at CD875153 - - 2e-1 At2g18670 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1619968_at CF604378 similar to cysteine protease Cp5 - 3e-2 At3g19400 cysteine proteinase, putative C.G. S.X.
0.07 2e-5 50 Zea mays Zm.12475.1.S1_at AW600588 - - 8e-1 At3g54940 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006527 The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
L GO:0008295 The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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