CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0107600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os04g0107600 AK058573.1 - Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC) 1e+0 At5g08139 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.53 71.3 Os11g0689100 AK108692.1 - Disease resistance protein family protein 2e+0 At4g22400 unknown protein S.X. H.G.
0.50 68.0 Os01g0327000 NM_183815.1 - Conserved hypothetical protein 7e-7 At1g14540 anionic peroxidase, putative S.X. H.G.
0.47 62.3 Os03g0121300 AK064633.1 - Peroxidase 1 9e-3 At5g14130 peroxidase, putative S.X. H.G.
0.44 58.1 Os04g0494600 AK110895.1 - Protein of unknown function DUF642 family protein 5e-2 At3g17410 serine/threonine protein kinase, putative S.X. H.G.
0.40 51.1 Os04g0308400 CB965389 - Conserved hypothetical protein 1e+1 At3g48020 - S.X. H.G.
0.34 40.0 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein S.X. H.G.
0.31 34.5 Os07g0524900 AK071512.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At4g16240 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
84.3 100.0 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
56.2 99.9 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
31.9 99.7 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
28.8 99.6 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
26.4 99.5 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
26.2 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.1 99.4 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
22.2 99.3 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
12.4 98.3 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.2 97.4 GSM275413 Azucena root tip_Buckled at the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 42 Os03g0745500 9631.m05236 - Conserved hypothetical protein 1e-1 At3g05570 unknown protein C.G. S.X.
0.01 6e-4 48 Os12g0268000 AK071599.1 - Cytochrome P450 71A1 (EC 1.14.-.-) (CYPLXXIA1)(ARP-2) 2e-1 At5g67310 CYP81G1 C.G. S.X.
0.01 6e-4 48 Os12g0268100 AK121788.1 - Hypothetical protein 3e-1 At5g67310 CYP81G1 C.G. S.X.
0.01 3e-2 42 Os03g0452600 9631.m03346 - - 9e+0 At5g45940 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) C.G. S.X.
0.01 3e-2 42 Os06g0148800 9634.m00482 - Cyclin-like F-box domain containing protein 6e-1 At3g17670 binding C.G. S.X.
0.01 1e-1 40 Os01g0231600 9629.m01278 - - 7e-7 At4g32780 phosphoinositide binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Arabidopsis thaliana At5g08139 830709 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVBA - - - C.G. S.X.
0.02 2e+0 36 Glycine max PsAffx.psMC009xE03f_s_at PsAffx.psMC009xE03f - - 2e-1 At3g10405 unknown protein C.G. S.X.
0.32 3e-67 256 Hordeum vulgare Contig5994_s_at Contig5994 - - 3e+0 At5g56060 ATP binding / nucleotide binding / phenylalanine-tRNA ligase C.G. S.X.
0.02 4e-1 38 Populus trichocarpa PtpAffx.125952.1.S1_s_at BI121036 hypothetical protein - 1e+0 At2g36325 hydrolase, acting on ester bonds C.G. S.X.
0.10 8e-8 59 Triticum aestivum Ta.4072.1.A1_at BJ264536 - - 1e+0 At2g42140 VQ motif-containing protein C.G. S.X.
0.02 5e-3 42 Vitis vinifera 1614479_at BQ796528 arginine decarboxylase - 6e-21 At2g16500 ADC1 (ARGININE DECARBOXYLASE 1) C.G. S.X.
0.21 9e-55 214 Zea mays Zm.15155.1.A1_at CO526660 hypothetical protein LOC100193626 - 2e+0 At3g27200 plastocyanin-like domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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