CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0854600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.2 Os03g0854600 AK104577.1 - Glycoside hydrolase, family 16 domain containingprotein 7e-1 At3g50820 PSBO2 (PHOTOSYSTEM II SUBUNIT O-2) S.X. H.G.
0.57 77.0 Os07g0557200 AK101098.1 - Delayed-early response protein/equilibrativenucleoside transporter family protein 8e-5 At4g05120 FUR1 (FUDR RESISTANT 1) S.X. H.G.
0.33 38.8 Os03g0719000 AK108923.1 - MAP65/ASE1 family protein 5e-2 At1g52890 ANAC019 (Arabidopsis NAC domain containing protein 19) S.X. H.G.
0.31 34.5 Os01g0826800 AK111090.1 - Conserved hypothetical protein 1e-1 At2g30230 unknown protein S.X. H.G.
0.27 27.5 Os06g0534800 AK120650.1 - Ankyrin repeat containing protein 3e+0 At5g23100 unknown protein S.X. H.G.
0.27 27.5 Os08g0532700 AK073978.1 - Peroxidase 55 precursor (EC 1.11.1.7) (AtperoxP55) (ATP20a) 4e-5 At5g58400 peroxidase, putative S.X. H.G.
0.20 16.5 Os01g0719600 AK070988.1 - Heavy metal transport/detoxification proteindomain containing protein 2e-6 At3g24450 copper-binding family protein S.X. H.G.
0.19 15.1 Os08g0501900 AK063130.1 - Conserved hypothetical protein 1e+0 At5g23750 remorin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.4 98.3 GSM359921 Pokkali root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.2 98.2 GSM359924 Pokkali root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.7 97.6 GSM359906 FL478 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.6 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM359919 Pokkali root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.4 97.5 GSM359922 Pokkali root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.3 97.5 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.2 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 5e-28 127 Os02g0127800 AK073018.1 - Glycoside hydrolase, family 16 domain containingprotein 5e-8 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.21 1e-22 109 Os03g0239000 AK061284.1 - Glycoside hydrolase, family 16 domain containingprotein 2e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.20 8e-27 123 Os10g0577500 AK068365.1 - Glycoside hydrolase, family 16 domain containingprotein 3e+0 At5g07572 unknown protein C.G. S.X.
0.19 1e-34 149 Os02g0696500 AK101915.1 - - 7e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.14 2e-6 56 Os03g0108300 AK061126.1 - Cellulase (EC 3.2.1.4) 6e-4 At4g30270 MERI5B (meristem-5) C.G. S.X.
0.13 7e-21 103 Os09g0395600 AK122079.1 - Glycoside hydrolase, family 16 domain containingprotein 1e-2 At1g14720 XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2) C.G. S.X.
0.06 2e-5 52 Os06g0696500 9634.m04702 - Xyloglucan endo-transglycosylase precursor 7e-3 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Arabidopsis thaliana At3g50820 824246 PSBO2 (PHOTOSYSTEM II SUBUNIT O-2) Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO2 is the minor isoform in the wild-type. Mutants defective in this gene have been shown to be affected in the dephosphorylation of the D1 protein of PSII. - - - C.G. S.X.
0.02 2e-2 42 Glycine max PsAffx.psHB018xG05f_at PsAffx.psHB018xG05f - - 4e+0 At4g08740 unknown protein C.G. S.X.
0.16 5e-25 115 Hordeum vulgare Contig7337_at Contig7337 - - 1e-2 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.03 6e-2 40 Populus trichocarpa PtpAffx.202676.1.S1_at pmrna5337 hypothetical protein - 1e-1 At4g13080 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.36 3e-34 147 Triticum aestivum TaAffx.105595.1.S1_at CK208387 - - 6e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.07 2e-13 75 Vitis vinifera 1615809_at CB980277 hypothetical protein LOC100267763 - 4e-11 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.06 5e-6 52 Zea mays Zm.14849.1.A1_at AW256200 - - 4e-4 At1g10550 XTH33 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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