CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0843400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0843400 AK061198.1 - 30S ribosomal protein S6, chloroplast precursor(Fragment) 3e-2 At1g64510 ribosomal protein S6 family protein S.X. H.G.
0.67 87.2 Os05g0337400 AU198228 - Heavy metal transport/detoxification proteindomain containing protein 6e+0 At5g64150 methylase family protein S.X. H.G.
0.67 87.2 Os01g0278900 AK120429.1 - Hypothetical protein 3e-7 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) S.X. H.G.
0.67 87.2 Os03g0815400 AK067057.1 - Ribosomal protein L17 family protein 1e-4 At3g54210 ribosomal protein L17 family protein S.X. H.G.
0.59 78.0 Os01g0678600 AK120629.1 - Ribosomal protein S20 family protein 1e-1 At4g30460 glycine-rich protein S.X. H.G.
0.53 71.3 Os04g0461100 AK068022.1 - Plastid and cyanobacterial ribosomal proteinPSRP-3/Ycf65 family protein 8e-12 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 97.5 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.9 97.3 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.7 97.3 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.6 97.3 GSM421667 XOC, 2 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.5 97.2 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.4 97.2 GSM278853 KT95-418-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.1 97.1 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.1 97.1 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.1 97.1 GSM421675 XOC, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.0 97.0 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 38 Os03g0272250 9631.m01615 - - 3e+0 At2g47270 transcription factor/ transcription regulator C.G. S.X.
0.02 3e-4 48 Os08g0154300 AK058325.1 - Transaldolase family protein 1e-2 At1g12230 transaldolase, putative C.G. S.X.
0.02 3e-1 38 Os03g0812400 AK119951.1 - Calcium-binding EF-hand domain containing protein 4e-4 At1g32250 calmodulin, putative C.G. S.X.
0.02 3e-1 38 Os06g0694100 AK073594.1 - ARM repeat fold domain containing protein 8e-1 At1g53620 unknown protein C.G. S.X.
0.02 3e-1 38 Os08g0469100 AK108789.1 - Peptidase aspartic family protein 3e+0 At5g33340 CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1) C.G. S.X.
0.02 3e-1 38 Os09g0341600 AK071689.1 - Cyclin-like F-box domain containing protein 2e-1 At1g77855 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-2 40 Arabidopsis thaliana At1g64510 842759 ribosomal protein S6 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP - - - C.G. S.X.
0.14 1e-5 52 Glycine max Gma.10595.1.S1_at CD414051 - - 2e-40 At1g64510 ribosomal protein S6 family protein C.G. S.X.
0.43 4e-114 410 Hordeum vulgare Contig8956_at Contig8956 - - 7e-3 At1g64900 CYP89A2 (CYTOCHROME P450 89A2) C.G. S.X.
0.10 2e-4 48 Populus trichocarpa Ptp.5722.1.S1_at CV226697 hypothetical protein - 2e-15 At1g64510 ribosomal protein S6 family protein C.G. S.X.
0.35 2e-77 289 Triticum aestivum Ta.13366.2.S1_x_at CA616461 - - 9e-1 At1g64510 ribosomal protein S6 family protein C.G. S.X.
0.16 1e-8 59 Vitis vinifera 1620684_at CA811105 hypothetical protein LOC100244408 - 5e-10 At1g64510 ribosomal protein S6 family protein C.G. S.X.
0.02 6e-2 38 Zea mays Zm.348.2.A1_a_at CK347453 acidic ribosomal protein P3 - 9e-2 At1g64620 Dof-type zinc finger domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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