CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0809300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os03g0809300 AK103140.1 - Protein phosphatase 2C-like domain containingprotein 1e-3 At4g16580 catalytic S.X. H.G.
0.57 77.0 Os01g0908500 AK072213.1 - Mg2+ transporter protein, CorA-like family protein 2e-5 At3g19640 magnesium transporter CorA-like family protein (MRS2-3) S.X. H.G.
0.51 68.7 Os02g0742100 AK072122.1 - Hypothetical protein 7e-3 At3g48050 DNA binding / protein binding / transcription regulator S.X. H.G.
0.47 62.3 Os03g0752700 CB644776 - Heat shock protein DnaJ, N-terminal domaincontaining protein 3e-1 At5g39250 F-box family protein S.X. H.G.
0.43 55.4 Os01g0147200 AK121921.1 - - 3e-7 At1g32130 - S.X. H.G.
0.39 48.3 Os02g0182800 AB007627.2 - Homeodomain transcription factor KNAT7 4e-27 At5g11060 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) S.X. H.G.
0.33 38.8 Os08g0305300 AK105754.1 - TPR-like domain containing protein 5e-4 At5g19400 SMG7 S.X. H.G.
0.27 27.5 Os03g0223700 AK068416.1 - ARM repeat fold domain containing protein 2e-49 At2g01690 binding S.X. H.G.
0.25 24.1 Os02g0184500 AK105238.1 - - 7e-4 At5g32440 - S.X. H.G.
0.23 21.2 Os05g0292200 AK065373.1 - Transcription factor IIA large subunit (TFIIA-L1) 3e+0 At4g14315 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 95.7 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
3.8 95.7 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.0 94.6 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
2.8 94.3 GSM154950 Leaf_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
2.8 94.3 GSM154955 Leaf_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
2.8 94.3 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
2.6 93.8 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
2.5 93.6 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
2.5 93.6 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
2.5 93.6 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-2 42 Os09g0526700 AB097460.1 - UDP-Glucose 4-epimerase (EC 5.1.3.2) 3e+0 At4g20460 NAD-dependent epimerase/dehydratase family protein C.G. S.X.
0.01 1e-1 40 Os01g0611200 9629.m04080 - - 2e+0 At5g15350 plastocyanin-like domain-containing protein C.G. S.X.
0.01 1e-1 40 Os05g0461300 AK111917.1 - Ras-related protein Rab-8A (Oncogene c-mel) 4e-48 At3g53610 ATRAB8 C.G. S.X.
0.01 1e-1 40 Os06g0178900 D45384.1 - Vacuolar H+-pyrophosphatase (EC 3.6.1.1) (Ovp2) 4e-115 At1g15690 AVP1 C.G. S.X.
0.01 5e-1 38 Os12g0475750 9640.m02790 - - 1e+0 At3g61230 LIM domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-3 46 Arabidopsis thaliana At4g16580 827359 catalytic F:catalytic activity;P:unknown;C:unknown;MFOPB - - - C.G. S.X.
0.04 7e-6 54 Glycine max GmaAffx.83171.1.S1_at BQ610435 - - 1e-2 At4g16580 catalytic C.G. S.X.
0.39 2e-114 412 Hordeum vulgare Contig8655_at Contig8655 - - 5e-6 At4g16580 catalytic C.G. S.X.
0.07 1e-4 50 Populus trichocarpa PtpAffx.51059.1.A1_at CV266039 hypothetical protein - 3e-1 At4g16580 catalytic C.G. S.X.
0.31 7e-67 256 Triticum aestivum Ta.460.1.S1_a_at BG908990 - - 1e-4 At4g16580 catalytic C.G. S.X.
0.06 3e-7 56 Vitis vinifera 1613263_at CB918718 - - 2e-12 At4g16580 catalytic C.G. S.X.
0.27 3e-82 305 Zea mays Zm.6686.1.A1_at AY107202.1 hypothetical protein LOC100191645 - 3e-3 At4g16580 catalytic C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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