CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0800000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os03g0800000 AK064790.1 - Conserved hypothetical protein 3e-4 At2g39210 nodulin family protein S.X. H.G.
0.67 87.2 Os12g0638300 AK068058.1 - Nitrate transporter NRT1-5 (Fragment) 3e-1 At1g30475 - S.X. H.G.
0.40 51.1 Os07g0667300 AK120101.1 - Zn-finger, CONSTANS type domain containing protein 5e-5 At2g22100 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.40 51.1 Os01g0556700 BM038703 - Dicarboxylate transporter 7e-11 At2g26690 nitrate transporter (NTP2) S.X. H.G.
0.22 19.4 Os06g0601500 CA764046 - ab initio prediction with EST support 1e-9 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) S.X. H.G.
0.11 6.5 Os04g0457500 AU075570 - Gamma-glutamyltranspeptidase family protein 7e+0 At4g12380 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.5 99.7 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
28.8 99.6 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
27.9 99.6 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
11.2 98.2 GSM421709 MOCK, 2 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.6 97.9 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
9.0 97.8 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
8.9 97.8 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.8 97.8 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.3 97.7 GSM154955 Leaf_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
7.7 97.6 GSM421688 XOO, 2 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 6e-146 519 Os07g0187900 AK062594.1 - Nodule-specific protein-like 8e-5 At2g39210 nodulin family protein C.G. S.X.
0.45 4e-150 533 Os12g0484600 AK058449.1 - Nodule-specific protein-like 1e-2 At1g63030 ddf2 (DWARF AND DELAYED FLOWERING 2) C.G. S.X.
0.29 6e-47 190 Os12g0637800 AK109612.1 - Nodulin-like domain containing protein 1e-3 At2g39210 nodulin family protein C.G. S.X.
0.25 2e-77 291 Os12g0637700 AK070555.1 - Nodulin-like domain containing protein 1e-3 At2g39210 nodulin family protein C.G. S.X.
0.20 7e-50 200 Os08g0298500 9636.m01990 - - 3e-1 At2g48120 PAC (PALE CRESS) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-4 48 Arabidopsis thaliana At2g39210 818506 nodulin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFMA - - - C.G. S.X.
0.03 4e-4 48 Glycine max GmaAffx.91225.1.S1_at CF806950 - - 5e+0 At5g55380 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related C.G. S.X.
0.03 2e-6 54 Hordeum vulgare Contig3535_at Contig3535 - - 2e-2 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.04 2e-3 46 Populus trichocarpa PtpAffx.219784.1.S1_at pmrna35863 hypothetical protein - 2e-11 At2g28120 nodulin family protein C.G. S.X.
0.34 4e-50 200 Triticum aestivum Ta.7814.1.S1_at BJ250219 - - 2e-1 At1g02090 FUS5 (FUSCA 5) C.G. S.X.
0.02 9e-2 38 Vitis vinifera 1621077_s_at CB975305 hypothetical protein LOC100256381 - 2e-17 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.02 1e-1 38 Zea mays Zm.16490.1.S1_at CO526480 3-methyl-2-oxobutanoate hydroxymethyltransferase - 2e-7 At3g61530 PANB2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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