CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0795500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os03g0795500 AK101877.1 - Protein of unknown function DUF1000 family protein 2e-4 At3g04780 - S.X. H.G.
0.31 34.5 Os05g0573000 AK066560.1 - Hypothetical protein 4e-1 At3g09730 unknown protein S.X. H.G.
0.12 7.2 Os03g0339100 AK111641.1 - PP1/PP2A phosphatases pleiotropic regulator PRL2 2e-17 At4g15900 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) S.X. H.G.
0.08 4.2 Os04g0129600 AK070089.1 - Conserved hypothetical protein 5e-1 At5g63030 glutaredoxin, putative S.X. H.G.
0.07 3.7 Os02g0197500 9630.m00956 - Regulator of chromosomecondensation/beta-lactamase-inhibitor protein II domaincontaining protein 6e-5 At5g48330 regulator of chromosome condensation (RCC1) family protein S.X. H.G.
0.07 3.7 Os01g0658500 AK058491.1 - Eukaryotic protein of unknown function DUF852family protein 1e-1 At4g19003 VPS25 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.6 99.2 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
17.0 98.8 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
10.1 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.3 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-175 617 Os03g0795600 AK107547.1 - Protein of unknown function UPF0005 family protein 5e-4 At4g02690 glutamate binding C.G. S.X.
0.09 3e-14 81 Os07g0177200 AK070925.1 - Protein of unknown function UPF0005 family protein 5e-10 At3g63310 glutamate binding C.G. S.X.
0.07 7e-9 63 Os03g0745600 9631.m05237 - Protein of unknown function UPF0005 family protein 6e-6 At3g63310 glutamate binding C.G. S.X.
0.06 2e-12 75 Os07g0177300 AK073781.1 - Protein of unknown function UPF0005 family protein 6e-4 At4g15470 - C.G. S.X.
0.05 7e-12 73 Os11g0581900 AK069449.1 - Protein of unknown function UPF0005 family protein 2e-6 At4g14730 transmembrane protein-related C.G. S.X.
0.02 2e-2 42 Os03g0795800 AU101730 - Protein of unknown function UPF0005 family protein 7e+0 At4g19700 RING C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-4 48 Arabidopsis thaliana At3g04780 819638 - Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein. - - - C.G. S.X.
0.08 5e-9 63 Glycine max Gma.16051.1.S1_at CD398111 - - 6e-25 At3g04780 - C.G. S.X.
0.41 2e-153 541 Hordeum vulgare Contig9259_at Contig9259 - - 2e-6 At3g04780 - C.G. S.X.
0.14 7e-8 59 Populus trichocarpa Ptp.1676.1.A1_at CK092862 hypothetical protein - 5e-9 At3g04780 - C.G. S.X.
0.40 3e-145 515 Triticum aestivum Ta.8239.1.S1_a_at CN013171 - - 2e+0 At3g04780 - C.G. S.X.
0.10 6e-8 57 Vitis vinifera 1622119_s_at CB915301 hypothetical protein LOC100258911 - 4e-19 At3g04780 - C.G. S.X.
0.36 4e-164 577 Zea mays Zm.19160.1.S1_at CO522402 thioredoxin-like protein 1 - 6e-7 At3g04780 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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