CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0787000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0787000 AK065950.1 - Syntaxin 1e-2 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) S.X. H.G.
0.73 91.1 Os05g0127300 AK106429.1 - Cytokinin-regulated kinase 1 2e-2 At1g78980 SRF5 (STRUBBELIG-RECEPTOR FAMILY 5) S.X. H.G.
0.67 87.2 Os02g0314600 AK068924.1 - Peptidase A1, pepsin family protein 1e+0 At5g55570 unknown protein S.X. H.G.
0.57 77.0 Os01g0582600 9629.m03821 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein S.X. H.G.
0.55 73.7 Os01g0934100 AK100995.1 - C2 domain containing protein 7e-1 At5g62720 integral membrane HPP family protein S.X. H.G.
0.30 32.7 Os03g0761100 AK066083.1 - Protein phosphatase 2C-like protein 6e-8 At4g33920 protein phosphatase 2C family protein / PP2C family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.0 98.6 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
13.9 98.5 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.8 98.1 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.1 97.7 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.0 97.6 GSM278845 WuYun3-RSV infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.1 97.4 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
6.9 97.3 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.8 97.3 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
6.5 97.2 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
6.5 97.2 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 2e-27 125 Os06g0590500 AK107080.1 - Syntaxin 121 (AtSYP121) (Syntaxin-related proteinAt-Syr1) 2e-4 At4g03330 SYP123 (SYNTAXIN OF PLANTS 123) C.G. S.X.
0.19 2e-18 95 Os03g0736500 9631.m05153 - Syntaxin-related protein KNOLLE (Syntaxin 111)(AtSYP111) 4e-5 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) C.G. S.X.
0.07 1e-9 65 Os10g0416600 NM_196499.1 - - 3e-5 At3g19120 unknown protein C.G. S.X.
0.07 5e-9 63 Os06g0658000 9634.m04338 - - 3e-1 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) C.G. S.X.
0.03 5e-6 54 Os08g0433300 9636.m03373 - Sialidase domain containing protein 6e-1 At1g52810 2-oxoglutarate-dependent dioxygenase-related C.G. S.X.
0.03 2e-5 52 Os03g0772000 9631.m05485 - Beta glucanase precursor (EC 3.2.1.73) (Fragment) 6e-1 At1g20470 auxin-responsive family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-2 42 Arabidopsis thaliana At5g61270 836248 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) Basic helix-loop-helix (bHLH) phytochrome interacting factor. Interacts specifically with the far-red light–absorbing Pfr form of phyB through a conserved domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation. - - - C.G. S.X.
0.03 9e-4 46 Glycine max HgAffx.3611.1.A1_at CK349169 - - 8e-4 At5g56950 NAP1 C.G. S.X.
0.28 2e-88 325 Hordeum vulgare Contig22370_at Contig22370 - - 5e-3 At1g29160 Dof-type zinc finger domain-containing protein C.G. S.X.
0.03 1e-2 42 Populus trichocarpa PtpAffx.209719.1.S1_at pmrna19184 hypothetical protein - 2e-28 At1g11250 SYP125 (SYNTAXIN OF PLANTS 125) C.G. S.X.
0.52 0 634 Triticum aestivum Ta.13966.2.S1_s_at CK198271 - - 2e-1 At5g09750 HEC3 (HECATE 3) C.G. S.X.
0.06 3e-6 52 Vitis vinifera 1608365_at CF205987.1 hypothetical protein LOC100265818 - 4e-4 At3g52400 SYP122 (SYNTAXIN OF PLANTS 122) C.G. S.X.
0.41 8e-91 333 Zea mays Zm.9852.1.A1_at BM381073 syntaxin 121 - 5e-3 At5g63740 zinc finger protein-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage